# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.001377		
2kt7A	102	0.6916		
3g5wA	318	3.863		
2qqzA	126	4.481		
2f05A	105	5.066	a.59.1.1	132651
1bsgA	266	7.577	e.3.1.1	42729
1cjcA	460	8.651	c.3.1.1,c.4.1.1	30319,30604
2gpjA	252	12.69		
2go2A	163	12.83		
3dtnA	234	15.30		
3dp7A	363	15.62		
2p74A	263	16.16		
2idqA	105	17.02		
1cqxA	403	18.70	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2gzbA	166	19.67		
3ib7A	330	20.06		
3gnhA	403	20.74		
3dr2A	305	22.19		
1w24A	182	25.38	d.159.1.7	120579
1suvE	345	26.58	i.21.1.1	99011
2r6hA	290	27.13		
1kzfA	230	27.65	d.108.1.3	73354
3ihwA	184	30.10		
2f6eA	127	31.16		
2zwnA	339	31.41		
1a8pA	258	34.23	b.43.4.2,c.25.1.1	25654,31544
3lydA	161	34.35		
2pia	321	34.50		
3ic8A	310	35.56		
2o2gA	223	39.11		
1vqoT	120	39.28	b.34.5.1	120381
3jqqA	316	39.76		
2piaA	321	40.68	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1jb9A	316	40.69	b.43.4.2,c.25.1.1	62840,62841
1nc7A	138	40.85	b.123.1.1	85549
2v05A	311	43.04		
1gvhA	396	43.17	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1i2sA	282	43.37	e.3.1.1	71104
3h5zA	438	46.18		
2qc5A	300	47.14		
1bxvA	91	47.38	b.6.1.1	22875
2r3sA	335	48.49		
1vr5A	547	49.82	c.94.1.1	120437
2nnrA	110	51.21	b.1.26.1	148321
3hrzB	252	51.50		
2wuuA	421	51.68		
2ww5A	468	52.71		
3f7mA	279	52.94		
2wsaA	438	54.14		
3fv7A	244	56.37		
3c6bA	299	57.48		
1m6kA	251	57.63	e.3.1.1	78695
2k2sB	61	57.71		
2gimA	106	57.86	b.6.1.1	135244
1a0rB	340	59.42	b.69.4.1	27658
3hm7A	448	60.47		
1smpI	101	60.81	b.61.2.1	27417
2g3wA	182	61.82	c.52.1.33	147077
3gu3A	284	61.95		
2h7wA	131	62.67	b.1.26.1	136225
3g4pA	244	64.14		
1b6g	310	64.89		
1auiA	521	71.01	d.159.1.3	42085
2ot9A	180	71.52	c.52.1.33	149009
1ifcA	132	73.32	b.60.1.2	27173
1icmA	131	74.04	b.60.1.2	27174
3kdfB	132	76.13		
1efyA	350	77.11	a.41.1.1,d.166.1.2	17413,42275
1bhgA	613	79.29	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2bgiA	272	79.69		
2hfxA	260	82.41		
2rf5A	258	82.62		
2qdxA	257	82.77		
1zu0A	529	84.27		
2gpfA	72	84.69	d.100.2.1	147153
3i53A	332	84.81		
3c12A	138	88.24		
3gdcA	288	88.75		
2p9wA	334	88.75		
1kzqA	289	89.22	b.6.2.1,b.6.2.1	73374,73375
3h1tA	590	89.39