# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.004269		
2kt7A	102	0.9729		
3dtnA	234	5.061		
3dp7A	363	11.97		
1cjcA	460	12.40	c.3.1.1,c.4.1.1	30319,30604
2f05A	105	14.15	a.59.1.1	132651
3lydA	161	14.20		
2wsaA	438	16.88		
3iu1A	383	20.14		
3ihwA	184	22.16		
2qqzA	126	24.83		
1smpI	101	25.58	b.61.2.1	27417
2wuuA	421	25.88		
3dpcA	455	26.82		
3gu3A	284	27.00		
2k2oA	123	27.80		
1vr5A	547	30.24	c.94.1.1	120437
3gnhA	403	30.48		
1zu0A	529	30.68		
3h5zA	438	30.84		
2v05A	311	31.16		
2r3sA	335	32.15		
2bibA	547	33.03	b.109.1.1,d.157.1.8	128581,128582
1dynA	125	37.07	b.55.1.1	26955
1wznA	252	38.48	c.66.1.43	121525
1ehxA	94	39.27	b.1.18.13	21950
3c12A	138	41.51		
3ib7A	330	43.62		
2jspA	87	43.72		
2rf5A	258	44.96		
2eryA	172	46.84	c.37.1.8	132306
2gpfA	72	51.64	d.100.2.1	147153
2gjsA	176	51.72	c.37.1.8	135287
3g5wA	318	52.88		
2p5zX	491	58.02	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
3ggrA	270	59.06		
1suvE	345	60.17	i.21.1.1	99011
3kyjB	145	61.95		
1vqoQ	96	62.62	b.34.5.1	120378
2gh1A	301	62.77	c.66.1.49	135170
3hceA	289	66.00		
2bkfA	87	68.68	d.15.2.2	128699
1wv8A	73	68.73	d.304.1.1	121326
1efyA	350	69.48	a.41.1.1,d.166.1.2	17413,42275
2c0rA	362	69.65	c.67.1.4	129604
1kaoA	167	70.00	c.37.1.8	32014
1kdjA	102	72.87	b.6.1.1	22864
2fblA	153	73.33	d.63.1.2	133249
2f6eA	127	73.72		
1bxvA	91	74.91	b.6.1.1	22875
3i53A	332	78.39		
1t1gA	364	78.76	c.41.1.2	106246
3cyjA	372	82.09		
2j43A	219	84.04	b.3.1.3,b.3.1.3	147864,147865
7aatA	401	86.59	c.67.1.1	34250
3grwA	241	87.92		
3i5tA	476	88.14