# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.002507		
2kt7A	102	0.4228		
1cjcA	460	3.757	c.3.1.1,c.4.1.1	30319,30604
2qqzA	126	5.671		
2f05A	105	7.714	a.59.1.1	132651
3dr2A	305	8.163		
2gzbA	166	8.728		
2go2A	163	12.09		
3dp7A	363	14.66		
3lydA	161	14.70		
3dtnA	234	16.57		
3c12A	138	17.27		
3g5wA	318	17.72		
2qc5A	300	18.19		
1bsgA	266	18.90	e.3.1.1	42729
3ihwA	184	19.15		
3ib7A	330	20.06		
2gpjA	252	21.44		
2f6eA	127	22.00		
1bhgA	613	22.31	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1suvE	345	22.97	i.21.1.1	99011
3f7mA	279	26.28		
3gnhA	403	26.48		
2v05A	311	27.01		
2o2gA	223	29.62		
2ww5A	468	30.51		
2p74A	263	31.60		
1w24A	182	31.61	d.159.1.7	120579
1ifcA	132	36.83	b.60.1.2	27173
2wewA	172	36.89		
1icmA	131	38.53	b.60.1.2	27174
2idqA	105	39.51		
2g3wA	182	40.29	c.52.1.33	147077
3ic8A	310	42.06		
2wsaA	438	43.82		
2ot9A	180	44.32	c.52.1.33	149009
2wuuA	421	45.82		
3h5zA	438	46.12		
2bcjB	340	46.90	b.69.4.1	128289
1smpI	101	46.99	b.61.2.1	27417
3gu3A	284	48.33		
1cqxA	403	48.72	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2r3sA	335	48.95		
2w18A	356	49.61		
2gpfA	72	50.55	d.100.2.1	147153
3hn3A	613	53.93		
3c6bA	299	53.99		
3caxA	369	54.36		
3g4pA	244	55.96		
1a0rB	340	57.48	b.69.4.1	27658
2h7wA	131	59.13	b.1.26.1	136225
1auiA	521	61.26	d.159.1.3	42085
1xuvA	178	61.64	d.129.3.5	116069
3i53A	332	63.08		
1bxvA	91	63.30	b.6.1.1	22875
1x9lA	149	63.51	b.2.10.1	109528
1vqoT	120	63.80	b.34.5.1	120381
2bmjA	178	68.44	c.37.1.8	128797
3ib0A	345	75.18		
2gjsA	176	75.34	c.37.1.8	135287
2iwrA	178	76.63		
1pwgA	349	78.07	e.3.1.1	104340
1gotB	340	78.16	b.69.4.1	27648
2nnrA	110	79.19	b.1.26.1	148321
2r6hA	290	80.40		
2p7oA	133	80.65		
1a8pA	258	82.29	b.43.4.2,c.25.1.1	25654,31544
1vr5A	547	83.87	c.94.1.1	120437
1b6g	310	84.17		
3cnwA	148	85.11	d.129.3.8	156848
3hm7A	448	85.74		
2j8gA	339	85.82	b.109.1.1,c.1.8.8	147915,147916
3e5zA	296	86.17		
2agyA	361	86.92		
3demA	278	87.74		
3dueA	127	89.22	d.98.2.1	157865
1quqA	129	89.63	b.40.4.3	25303