# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.001469 2kt7A 102 0.2453 1bsgA 266 0.3957 e.3.1.1 42729 3g5wA 318 0.6629 2p74A 263 1.255 1cjcA 460 1.385 c.3.1.1,c.4.1.1 30319,30604 3lydA 161 1.948 3h6jA 438 4.638 2qc5A 300 5.008 3grwA 241 5.069 2v05A 311 7.157 2gzbA 166 7.427 2nnrA 110 10.72 b.1.26.1 148321 3ic8A 310 11.40 2zq8A 262 12.22 2f05A 105 12.39 a.59.1.1 132651 3dr2A 305 13.69 1jiwI 106 14.07 b.61.2.1 63078 2go2A 163 14.83 1w24A 182 15.80 d.159.1.7 120579 2h7wA 131 16.04 b.1.26.1 136225 2w38A 438 18.36 2icgA 160 18.81 d.369.1.1 147601 1jb9A 316 19.47 b.43.4.2,c.25.1.1 62840,62841 3bf7A 255 21.91 1wcuA 153 22.69 2yw2A 424 22.96 1a8pA 258 24.94 b.43.4.2,c.25.1.1 25654,31544 2qdxA 257 25.51 2idqA 105 26.24 1ri6A 343 26.92 b.69.11.1 97503 1i2sA 282 27.22 e.3.1.1 71104 1g43A 160 28.47 b.2.2.2 22392 1kzqA 289 29.15 b.6.2.1,b.6.2.1 73374,73375 3demA 278 29.56 2r6hA 290 30.21 3dtnA 234 31.43 1p9bA 442 31.95 c.37.1.10 94385 3g4pA 244 32.71 1gotB 340 32.85 b.69.4.1 27648 2bgiA 272 33.89 1rm6A 769 34.69 d.41.1.1,d.133.1.1 111872,111873 1bxvA 91 35.01 b.6.1.1 22875 3hhuA 224 35.88 3ck2A 176 36.43 d.159.1.7 156724 3lz8A 329 36.76 3dw0A 294 37.16 2w2xC 124 37.53 3c12A 138 37.63 3c6bA 299 38.99 2id4A 503 39.26 b.18.1.20,c.41.1.1 137265,137266 1o7eA 276 39.66 e.3.1.1 92622 2hmaA 376 39.70 1icmA 131 41.20 b.60.1.2 27174 1r8nA 185 41.56 b.42.4.1 104851 1x9lA 149 41.70 b.2.10.1 109528 2oqzA 223 41.86 b.100.1.1 139255 1kzfA 230 42.85 d.108.1.3 73354 2yy3A 91 42.95 2ot9A 180 44.37 c.52.1.33 149009 3bm4A 210 44.53 2iufA 688 45.16 1qorA 327 45.73 b.35.1.2,c.2.1.1 24766,29782 1ejxC 567 46.25 b.92.1.1,c.1.9.2 83184,83185 1smpI 101 46.70 b.61.2.1 27417 1xuvA 178 46.99 d.129.3.5 116069 1oo2A 119 47.19 b.3.4.1 93372 2a74B 188 48.01 1w2wB 191 48.47 2piaA 321 48.90 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2wuuA 421 49.75 1czfA 362 49.93 b.80.1.3 28031 3ls2A 280 50.07 3kdfB 132 51.49 1vbiA 344 52.01 2pia 321 52.76 2gpfA 72 52.90 d.100.2.1 147153 1ntvA 152 53.56 b.55.1.2 86168 2hx0A 154 53.87 d.290.1.3 136830 1f7sA 139 55.32 d.109.1.2 40857 2w2xD 124 55.44 1wnyA 186 56.46 1zu0A 529 57.56 1uc2A 481 59.17 d.261.1.1 99161 2gimA 106 59.77 b.6.1.1 135244 1pjxA 314 60.58 b.68.6.1 104167 2qpnA 287 61.95 1gweA 503 62.06 e.5.1.1 70667 1t1gA 364 62.85 c.41.1.2 106246 1w32A 348 63.12 c.1.8.3 114120 3cneA 175 63.18 2vzsA 1032 65.35 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 1cseI 71 66.64 d.40.1.1 38559 1f3zA 161 68.17 b.84.3.1 28273 1p80A 753 69.71 c.23.16.3,e.5.1.1 94337,94338 1wba 175 71.74 1ifcA 132 72.99 b.60.1.2 27173 2il5A 171 73.20 d.129.3.5 147723 1krhA 338 74.88 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3gfcA 425 77.92 1seuA 592 78.14 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 2agyA 361 78.19 3k1wA 341 78.95 1ijqA 316 79.98 b.68.5.1,g.3.11.1 62506,62507 2qy0A 159 80.70 2w18A 356 81.90 3ioxA 497 81.91 1n9bA 265 82.32 e.3.1.1 85463 2qr3A 140 83.59 3jz7A 214 86.36 2bibA 547 86.74 b.109.1.1,d.157.1.8 128581,128582 1vqoT 120 86.75 b.34.5.1 120381 3hrzB 252 87.44 2ixkA 184 88.07 3d0nA 264 88.91 3dueA 127 89.16 d.98.2.1 157865