# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.003263		
2kt7A	102	0.5824		
1cjcA	460	3.802	c.3.1.1,c.4.1.1	30319,30604
2f05A	105	5.678	a.59.1.1	132651
2gpjA	252	9.720		
2qqzA	126	9.823		
3g5wA	318	10.58		
1bsgA	266	11.26	e.3.1.1	42729
2gzbA	166	11.29		
2go2A	163	12.54		
3dp7A	363	16.67		
3ib7A	330	17.06		
3dtnA	234	19.84		
3dr2A	305	21.55		
3ic8A	310	21.95		
2p74A	263	23.29		
2h7wA	131	23.61	b.1.26.1	136225
2r6hA	290	24.27		
2idqA	105	24.73		
1w24A	182	25.66	d.159.1.7	120579
2nnrA	110	26.15	b.1.26.1	148321
3lydA	161	28.21		
1cqxA	403	28.67	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
3ihwA	184	29.82		
2v05A	311	31.01		
2pia	321	32.32		
3c6bA	299	32.66		
1suvE	345	33.64	i.21.1.1	99011
2piaA	321	33.99	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
3f7mA	279	35.57		
1jb9A	316	36.13	b.43.4.2,c.25.1.1	62840,62841
2gpfA	72	36.34	d.100.2.1	147153
3gnhA	403	36.37		
2f6eA	127	38.30		
1kzfA	230	39.54	d.108.1.3	73354
1a0rB	340	41.94	b.69.4.1	27658
1bxvA	91	42.06	b.6.1.1	22875
3h5zA	438	45.16		
2wsaA	438	47.74		
1vqoT	120	51.38	b.34.5.1	120381
2wuuA	421	52.17		
2ww5A	468	53.01		
3jqqA	316	53.31		
1auiA	521	54.72	d.159.1.3	42085
1a8pA	258	54.86	b.43.4.2,c.25.1.1	25654,31544
2o2gA	223	59.06		
2qc5A	300	59.35		
1smpI	101	59.66	b.61.2.1	27417
1b6g	310	59.81		
3c12A	138	60.56		
2p5zX	491	60.74	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
2k2sB	61	61.01		
2bcjB	340	61.14	b.69.4.1	128289
1ifcA	132	62.13	b.60.1.2	27173
1nc7A	138	64.27	b.123.1.1	85549
3gu3A	284	64.33		
1vl2A	421	64.56	c.26.2.1,d.210.1.1	108708,108709
2r3sA	335	64.92		
1oo2A	119	66.09	b.3.4.1	93372
2w18A	356	69.06		
1dqzA	280	70.58	c.69.1.3	34638
2zwnA	339	70.94		
3g4pA	244	72.64		
2g3wA	182	72.88	c.52.1.33	147077
1efyA	350	73.26	a.41.1.1,d.166.1.2	17413,42275
3i53A	332	74.97		
1gvhA	396	75.72	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1kzqA	289	77.99	b.6.2.1,b.6.2.1	73374,73375
3hrzB	252	78.14		
1pwgA	349	78.32	e.3.1.1	104340
1icmA	131	78.73	b.60.1.2	27174
2bgiA	272	79.88		
1bhgA	613	79.93	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3d0nA	264	80.42		
1vr5A	547	80.65	c.94.1.1	120437
2qdxA	257	81.04		
2hfxA	260	81.41		
2il5A	171	81.53	d.129.3.5	147723
2ot9A	180	81.59	c.52.1.33	149009
2gimA	106	82.55	b.6.1.1	135244
2rf5A	258	83.82		
2a74B	188	85.61		
3fv7A	244	86.20		
2j8gA	339	87.46	b.109.1.1,c.1.8.8	147915,147916
3hm7A	448	89.43