# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000931		
2kt7A	102	0.2433		
3g5wA	318	7.067		
1bsgA	266	7.525	e.3.1.1	42729
2f05A	105	8.493	a.59.1.1	132651
2go2A	163	8.621		
2qqzA	126	9.568		
3dtnA	234	10.21		
3dp7A	363	13.20		
2gzbA	166	13.71		
3lydA	161	14.09		
3f7mA	279	15.64		
1cjcA	460	16.08	c.3.1.1,c.4.1.1	30319,30604
2p74A	263	19.61		
3gnhA	403	19.73		
3dr2A	305	20.23		
3ib7A	330	22.05		
2gpjA	252	25.17		
2idqA	105	28.94		
1cqxA	403	29.69	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
1bxvA	91	31.17	b.6.1.1	22875
3ihwA	184	34.72		
1kzfA	230	36.05	d.108.1.3	73354
1w24A	182	37.11	d.159.1.7	120579
3gu3A	284	38.63		
2r3sA	335	40.49		
1vr5A	547	40.84	c.94.1.1	120437
2k2sB	61	43.25		
2zwnA	339	44.76		
2f6eA	127	45.38		
2r6hA	290	46.21		
3ic8A	310	47.14		
3jqqA	316	47.18		
2v05A	311	49.59		
3hm7A	448	51.59		
2bcjB	340	51.91	b.69.4.1	128289
1a8pA	258	51.99	b.43.4.2,c.25.1.1	25654,31544
1auiA	521	53.58	d.159.1.3	42085
1nc7A	138	55.06	b.123.1.1	85549
1bhgA	613	56.96	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3hrzB	252	57.36		
3c6bA	299	57.93		
2icgA	160	58.31	d.369.1.1	147601
2ww5A	468	62.17		
2gpfA	72	62.63	d.100.2.1	147153
3fv7A	244	62.68		
1a0rB	340	63.25	b.69.4.1	27658
2nnrA	110	63.52	b.1.26.1	148321
1gvhA	396	65.39	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2w18A	356	65.87		
2oz3A	404	67.51		
1zu0A	529	67.68		
3g4pA	244	68.07		
1vqoT	120	68.35	b.34.5.1	120381
2g3wA	182	69.17	c.52.1.33	147077
1smpI	101	69.50	b.61.2.1	27417
2p5zX	491	69.63	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
2fblA	153	71.10	d.63.1.2	133249
2h7wA	131	72.32	b.1.26.1	136225
1ifcA	132	72.61	b.60.1.2	27173
2gimA	106	73.59	b.6.1.1	135244
3h5zA	438	75.08		
2wsaA	438	75.16		
2wuuA	421	77.24		
1icmA	131	77.63	b.60.1.2	27174
2pia	321	77.78		
3kyjB	145	78.29		
2a74B	188	80.41		
2ot9A	180	80.93	c.52.1.33	149009
2adzA	178	83.02	b.55.1.1	126599
1efyA	350	83.17	a.41.1.1,d.166.1.2	17413,42275
3dpcA	455	83.85		
3i53A	332	84.53		
1m6kA	251	84.66	e.3.1.1	78695
2piaA	321	85.61	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
3bf7A	255	85.63		
1suvE	345	85.96	i.21.1.1	99011
2gzsA	278	86.81	c.69.1.38	147209
2il5A	171	87.12	d.129.3.5	147723
1b6g	310	88.49		
2hfxA	260	88.64		
2qc5A	300	88.88