# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.001310		
2kt7A	102	0.4341		
1cjcA	460	4.740	c.3.1.1,c.4.1.1	30319,30604
2f05A	105	6.744	a.59.1.1	132651
3g5wA	318	7.428		
1bsgA	266	13.37	e.3.1.1	42729
1vr5A	547	13.47	c.94.1.1	120437
3dp7A	363	14.17		
3gnhA	403	15.74		
3ihwA	184	16.17		
3dtnA	234	16.48		
2qqzA	126	19.35		
1zu0A	529	20.87		
1cqxA	403	21.90	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2pia	321	21.93		
3dr2A	305	22.88		
3lydA	161	23.89		
1smpI	101	24.28	b.61.2.1	27417
2piaA	321	27.43	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
2gpjA	252	28.02		
3ib7A	330	28.31		
2p74A	263	28.74		
2zwnA	339	31.16		
2bibA	547	33.60	b.109.1.1,d.157.1.8	128581,128582
2go2A	163	34.94		
2gpfA	72	36.77	d.100.2.1	147153
2f6eA	127	38.28		
2r6hA	290	39.30		
3f7mA	279	40.18		
2gzbA	166	41.92		
1icmA	131	42.82	b.60.1.2	27174
3i53A	332	44.41		
1a8pA	258	44.68	b.43.4.2,c.25.1.1	25654,31544
2bgiA	272	45.48		
2qc5A	300	45.54		
1ifcA	132	45.74	b.60.1.2	27173
1w24A	182	46.48	d.159.1.7	120579
2ww5A	468	46.69		
1suvE	345	46.89	i.21.1.1	99011
3c12A	138	47.66		
1nc7A	138	49.45	b.123.1.1	85549
2v05A	311	50.74		
3gu3A	284	54.59		
1bxvA	91	54.71	b.6.1.1	22875
2r3sA	335	55.70		
2wsaA	438	56.59		
3h5zA	438	57.40		
1vqoT	120	58.01	b.34.5.1	120381
2qdxA	257	58.05		
1auiA	521	61.02	d.159.1.3	42085
1gvhA	396	62.49	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1kzfA	230	67.33	d.108.1.3	73354
2wuuA	421	67.98		
1jk7A	323	68.25	d.159.1.3	63144
2g3wA	182	69.50	c.52.1.33	147077
2p5zX	491	73.03	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
3k7mX	431	73.23		
2rf5A	258	73.33		
2k2sB	61	74.73		
1t1gA	364	75.61	c.41.1.2	106246
2h7wA	131	77.16	b.1.26.1	136225
2c5qA	240	77.51		
2ot9A	180	77.99	c.52.1.33	149009
3hm7A	448	78.47		
1bx7	55	79.34		
1bx7A	55	79.34	g.3.15.1	44355
3ic8A	310	81.66		
2k2oA	123	84.42		
1ijqA	316	86.05	b.68.5.1,g.3.11.1	62506,62507