# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.001023		
2kt7A	102	0.4083		
2f05A	105	3.867	a.59.1.1	132651
2qqzA	126	8.165		
3dp7A	363	11.81		
3dtnA	234	12.52		
3g5wA	318	12.88		
1cjcA	460	13.64	c.3.1.1,c.4.1.1	30319,30604
1bsgA	266	17.38	e.3.1.1	42729
1vr5A	547	17.61	c.94.1.1	120437
3dr2A	305	20.26		
3gnhA	403	21.16		
2r6hA	290	21.70		
2idqA	105	22.12		
2v05A	311	22.22		
3lydA	161	26.28		
2f6eA	127	27.00		
3ihwA	184	29.19		
1w24A	182	31.62	d.159.1.7	120579
1zu0A	529	33.19		
2gpjA	252	35.15		
1kzfA	230	35.75	d.108.1.3	73354
2r3sA	335	38.95		
1suvE	345	40.56	i.21.1.1	99011
1cqxA	403	40.82	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2gpfA	72	42.55	d.100.2.1	147153
3gu3A	284	42.82		
3jqqA	316	42.94		
3f7mA	279	43.12		
2wsaA	438	43.14		
2wuuA	421	44.53		
2p74A	263	44.59		
1ifcA	132	44.61	b.60.1.2	27173
1nc7A	138	46.22	b.123.1.1	85549
1icmA	131	48.28	b.60.1.2	27174
2g3wA	182	49.93	c.52.1.33	147077
2go2A	163	51.01		
3h5zA	438	52.22		
3hm7A	448	52.31		
2ww5A	468	53.50		
1a8pA	258	56.31	b.43.4.2,c.25.1.1	25654,31544
2bibA	547	56.83	b.109.1.1,d.157.1.8	128581,128582
1smpI	101	57.27	b.61.2.1	27417
2pia	321	57.55		
2vm8A	501	57.69		
1ijqA	316	59.23	b.68.5.1,g.3.11.1	62506,62507
1bx7	55	60.51		
1bx7A	55	60.51	g.3.15.1	44355
1bxvA	91	61.85	b.6.1.1	22875
2ot9A	180	63.16	c.52.1.33	149009
3i53A	332	63.51		
2oz3A	404	64.27		
2jspA	87	64.37		
2uxtA	451	64.62		
3c6bA	299	64.99		
2ftwA	521	66.82	b.92.1.3,c.1.9.6	134083,134084
2piaA	321	68.92	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1m6kA	251	69.26	e.3.1.1	78695
3c12A	138	71.14		
2k2sB	61	71.54		
1vqoT	120	74.37	b.34.5.1	120381
2fblA	153	75.09	d.63.1.2	133249
2rf5A	258	75.66		
1vcaA	202	75.95	b.1.1.3,b.1.1.4	21649,21685
3ib7A	330	76.00		
2iblA	130	76.01		
3ic8A	310	78.13		
2gimA	106	78.23	b.6.1.1	135244
2j8gA	339	79.24	b.109.1.1,c.1.8.8	147915,147916
3cnwA	148	80.17	d.129.3.8	156848
2icgA	160	80.35	d.369.1.1	147601
1a0rB	340	82.47	b.69.4.1	27658
1auiA	521	83.12	d.159.1.3	42085
1ejxC	567	84.76	b.92.1.1,c.1.9.2	83184,83185
2w18A	356	85.43		
2h7wA	131	87.10	b.1.26.1	136225
2k2oA	123	88.69		
2zwnA	339	89.37