# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.007554		
2kt7A	102	0.6345		
1cjcA	460	2.952	c.3.1.1,c.4.1.1	30319,30604
1suvE	345	7.211	i.21.1.1	99011
1f20A	435	8.490	b.43.4.1,c.25.1.4	64932,64933
3dpcA	455	9.146		
3ib7A	330	11.77		
3h5zA	438	12.38		
2j8gA	339	12.40	b.109.1.1,c.1.8.8	147915,147916
1vr5A	547	13.04	c.94.1.1	120437
1zu0A	529	19.05		
3iu1A	383	20.81		
2wsaA	438	20.84		
2wuuA	421	25.67		
2pbiB	354	26.41		
1wv8A	73	28.12	d.304.1.1	121326
1xuvA	178	30.10	d.129.3.5	116069
1ugxA	133	33.31		
2dpkA	152	38.06	b.1.27.1	131616
2f05A	105	38.47	a.59.1.1	132651
3ib0A	345	38.88		
1a02N	301	38.90	b.1.18.1,b.2.5.3	21923,22440
2nooA	502	39.72		
2yy3A	91	41.95		
2vqzA	166	42.81		
1f7sA	139	43.43	d.109.1.2	40857
3ihwA	184	44.21		
3demA	278	44.30		
1gotB	340	47.07	b.69.4.1	27648
2rf5A	258	50.42		
2jspA	87	50.73		
1xxqA	161	51.56		
1x6oA	174	52.76	b.34.5.2,b.40.4.5	109493,109494
3g5wA	318	53.82		
2v05A	311	57.66		
1isuA	62	58.41	g.35.1.1	44978
3lydA	161	59.78		
3c12A	138	60.26		
2idqA	105	60.77		
2qqzA	126	62.11		
3bojA	213	62.81	c.154.1.1	155451
2kk6A	116	63.18		
1dynA	125	63.65	b.55.1.1	26955
3ginA	160	66.70		
2gvhA	288	72.94	d.38.1.1,d.38.1.1	135776,135777
1bx7	55	73.59		
1bx7A	55	73.59	g.3.15.1	44355
3bz1U	104	76.12		
3k7mX	431	78.29		
3bwuF	142	79.54		
2o2gA	223	80.14		
3hxjA	330	80.87		
2gpfA	72	81.65	d.100.2.1	147153