# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000372		
2kt7A	102	0.6457		
3dp7A	363	11.75		
2o2gA	223	12.16		
2f05A	105	14.52	a.59.1.1	132651
1cjcA	460	15.18	c.3.1.1,c.4.1.1	30319,30604
1bsgA	266	17.13	e.3.1.1	42729
2p74A	263	19.24		
3dtnA	234	21.20		
2oryA	346	22.82		
3g5wA	318	27.43		
3f7mA	279	28.75		
2c0rA	362	28.81	c.67.1.4	129604
1a0rB	340	28.95	b.69.4.1	27658
2j1vA	151	32.58		
3c12A	138	35.64		
1vpmA	169	37.20	d.38.1.1	113967
3ib7A	330	39.08		
3g4pA	244	41.15		
2gzbA	166	43.43		
1b6g	310	44.66		
2idqA	105	47.17		
1suvE	345	47.41	i.21.1.1	99011
2vldA	251	50.96		
2go2A	163	51.07		
2qqzA	126	53.01		
3kyjB	145	53.03		
1xxqA	161	55.07		
1dbqA	289	55.73	c.93.1.1	35666
2dpkA	152	56.34	b.1.27.1	131616
1odtC	318	56.51	c.69.1.25	86885
3d0kA	304	60.56		
1bhgA	613	62.00	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2bcjB	340	62.37	b.69.4.1	128289
3ihwA	184	64.95		
3fvtA	320	65.37		
1ugxA	133	66.41		
3fv7A	244	66.91		
1w24A	182	67.99	d.159.1.7	120579
3ginA	160	69.52		
3dr2A	305	69.53		
3grwA	241	70.79		
2kk6A	116	73.90		
2oc3A	303	76.78		
3h1tA	590	77.15		
3gu3A	284	77.21		
2wwxA	175	78.35		
1xuvA	178	79.02	d.129.3.5	116069
1x9lA	149	79.14	b.2.10.1	109528
2il5A	171	81.09	d.129.3.5	147723
3i53A	332	82.41		
2wewA	172	83.49