# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	1.856		
2bibA	547	3.316	b.109.1.1,d.157.1.8	128581,128582
2j44A	217	4.201	b.3.1.3,b.3.1.3	147868,147869
3c12A	138	10.36		
3bwuF	142	11.01		
2re7A	134	11.86		
2kcpA	98	12.43		
2kfbA	182	13.58		
3cgmA	158	13.89		
1tifA	78	14.06	d.15.8.1	37836
1k9vF	201	14.21	c.23.16.1	68365
3fkyA	370	15.34		
1tif	78	15.36		
2dt4A	143	16.38		
2v05A	311	16.91		
2o2gA	223	17.28		
1ng2A	193	18.34	b.34.2.1,b.34.2.1	85660,85661
3hucA	360	18.49		
2fukA	220	20.11	c.69.1.36	147049
2j43A	219	21.21	b.3.1.3,b.3.1.3	147864,147865
1ollA	188	21.68	b.1.1.4,b.1.1.4	93313,93314
3gc8A	370	21.87		
2c3gA	98	22.19		
2gnqA	336	22.92		
3lo0A	193	23.03		
1osyA	115	23.12	b.1.21.1	93502
3bmzA	199	23.45		
1h09A	338	25.83	b.109.1.1,c.1.8.8	83420,83421
2i3dA	249	27.98	c.69.1.36	147499
3gm8A	801	28.81		
3i4qA	176	29.99		
1q0rA	298	31.01	c.69.1.28	95508
1nrgA	261	32.33	b.45.1.1	80694
1c4xA	285	35.42	c.69.1.10	34684
2kt7A	102	37.64		
2yysA	286	38.17		
2b1pA	355	38.70	d.144.1.7	127672
3d0kA	304	41.62		
1h5uA	842	42.54	c.87.1.4	60655
2k2oA	123	42.91		
3jybA	145	43.01		
1kj1D	109	44.07	b.78.1.1	68639
3bluA	305	44.24	c.45.1.2	155402
1dnlA	199	46.48	b.45.1.1	25753
2fstX	367	47.86		
3fnbA	405	47.92		
3lo5A	166	48.22		
3emhA	318	48.73		
2prdA	174	49.77	b.40.5.1	25435
2j8gA	339	50.12	b.109.1.1,c.1.8.8	147915,147916
2h14A	317	50.43		
2bqxA	173	51.68		
1yiqA	689	51.85		
2o0uA	364	52.05	d.144.1.7	138868
3lwkA	191	52.24		
2grgA	120	52.49	d.110.10.1	147159
2fhqA	141	52.85	b.45.1.1	133497
3fbwA	299	52.97		
1bn7A	294	54.20	c.69.1.8	34677
2x34A	181	55.22		
1jmoA	480	56.04	e.1.1.1	77138
2blnA	305	58.17	b.46.1.1,c.65.1.1	128734,128735
3gvfA	196	59.21		
3f67A	241	59.58		
1gtfA	74	60.05	b.82.5.1	70460
1dlcA	584	60.53	b.18.1.3,b.77.2.1,f.1.3.1	23719,27976,43391
1pjxA	314	61.53	b.68.6.1	104167
2gj4A	824	61.81	c.87.1.4	135256
3hxjA	330	62.78		
2kcoA	133	63.17		
1cjcA	460	63.86	c.3.1.1,c.4.1.1	30319,30604
2iabA	155	63.90		
1u2eA	289	64.95		
1y37A	304	66.33		
1yvcA	70	66.55	b.40.4.12	124094
2i02A	148	67.76	b.45.1.1	136936
1dynA	125	68.35	b.55.1.1	26955
1okiA	210	68.82	b.11.1.1,b.11.1.1	93255,93256
2h6lA	146	70.72	d.290.1.3	136197
1ty9A	222	72.05	b.45.1.1	112827
1mtzA	293	72.87	c.69.1.7	79467
2wj6A	276	73.81		
2au7A	175	74.18		
2i51A	195	74.28		
2icuA	229	75.05		
3ec6A	139	75.47		
2oryA	346	75.60		
2j0vA	212	76.94		
1ammA	174	78.59	b.11.1.1,b.11.1.1	23587,23588
1i40A	175	78.77	b.40.5.1	66024
1m8uA	173	78.80	b.11.1.1,b.11.1.1	91233,91234
1i2mA	216	78.92	c.37.1.8	61568
1abbA	828	78.97	c.87.1.4	35536
2gcoA	201	81.00		
1mj5A	302	81.92	c.69.1.8	91285
2bcoA	350	84.69	c.56.5.7	128302
3eh1A	751	84.85		
2ww5A	468	85.51		
1b9wA	89	86.32	g.3.11.4,g.3.11.4	44334,44335
3gd0A	367	87.30		
3dxkC	372	87.31		
2jhnA	295	87.73		
1qauA	112	89.25	b.36.1.1	24779
3h8nA	195	89.40