# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.001303 2kt7A 102 0.01195 2go2A 163 3.168 1a8pA 258 5.612 b.43.4.2,c.25.1.1 25654,31544 2gzbA 166 6.299 2gpjA 252 7.541 2qs8A 418 7.682 b.92.1.9,c.1.9.18 151311,151312 1yljA 263 8.070 3ic8A 310 8.756 2bibA 547 9.744 b.109.1.1,d.157.1.8 128581,128582 2gdnA 267 9.96 1ybqB 390 11.36 1x9lA 149 13.32 b.2.10.1 109528 2qdxA 257 13.72 3mag 307 13.99 1suvE 345 15.00 i.21.1.1 99011 1hzoA 271 16.47 e.3.1.1 71092 1v39 322 16.59 3ib0A 345 18.00 1jofA 365 19.04 b.69.10.1 71775 1m40A 263 19.72 e.3.1.1 74437 2p4bA 295 19.76 2piaA 321 19.76 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2ww5A 468 19.89 1dx5I 118 20.53 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 2k2oA 123 20.54 1vpt 348 20.77 2q8uA 336 21.43 1dyoA 160 21.44 b.18.1.7 23771 1xwvA 129 24.15 b.1.18.7 116134 1v73A 342 24.44 1i2sA 282 24.81 e.3.1.1 71104 3iu1A 383 27.00 2k2sB 61 28.46 2gpfA 72 28.64 d.100.2.1 147153 2v05A 311 29.56 3lygA 120 29.73 1z2wA 192 30.39 d.159.1.7 124390 1jaeA 471 30.76 b.71.1.1,c.1.8.1 27773,28760 1g9gA 629 31.77 a.102.1.2 83279 3griA 424 31.89 1w24A 182 32.00 d.159.1.7 120579 1faeA 629 34.71 a.102.1.2 18837 3jszA 525 34.92 2i4lA 458 37.11 1iysA 262 38.07 e.3.1.1 90723 2eixA 243 38.11 1h09A 338 39.87 b.109.1.1,c.1.8.8 83420,83421 2f6eA 127 40.50 2fctA 313 41.37 b.82.2.9 133282 3il0A 131 44.76 1uc2A 481 45.98 d.261.1.1 99161 3hn3A 613 46.12 2v43A 303 46.62 1qouA 181 48.36 b.17.1.1 23707 2j8gA 339 50.06 b.109.1.1,c.1.8.8 147915,147916 1bxvA 91 50.54 b.6.1.1 22875 1avwB 171 52.96 b.42.4.1 25599 2pqgA 265 53.26 3mkvA 426 53.58 2vhlA 396 53.71 1tvfA 369 54.49 b.105.1.2,e.3.1.1 107358,107359 1isuA 62 55.03 g.35.1.1 44978 3lydA 161 57.01 1zu0A 529 57.06 3c12A 138 58.06 1bhgA 613 58.84 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1sa3A 262 60.68 c.52.1.23 105400 2yy3A 91 61.03 3djsA 127 62.05 3g5wA 318 62.38 2idqA 105 64.36 2rf5A 258 66.55 1q90A 292 68.50 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1r5sA 132 68.83 f.50.1.1 111709 2w18A 356 68.88 3h5zA 438 69.34 2wuuA 421 70.79 2bgiA 272 74.31 2nnrA 110 74.66 b.1.26.1 148321 4tsvA 150 75.04 b.22.1.1 23860 2ywjA 186 76.57 2bt6A 108 77.00 d.15.4.1 129152 1nnwA 252 77.24 d.159.1.5 80674 2jspA 87 77.29 3hm7A 448 78.25 1bx1A 314 80.18 b.43.4.2,c.25.1.1 25629,31519 1smpI 101 80.21 b.61.2.1 27417 3feqA 423 82.13 3kk4A 125 83.14 2wzgA 525 83.14 3rabA 169 84.01 c.37.1.8 32018 3e5zA 296 84.17 2zwnA 339 86.39 2wsaA 438 86.53 2f05A 105 87.90 a.59.1.1 132651 1wkoA 180 88.37