# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.001374 2kt7A 102 0.01084 2go2A 163 1.608 1a8pA 258 1.720 b.43.4.2,c.25.1.1 25654,31544 2gdnA 267 4.463 2qdxA 257 5.195 2qs8A 418 5.294 b.92.1.9,c.1.9.18 151311,151312 2gzbA 166 5.400 3ic8A 310 5.576 2gpjA 252 8.219 2bibA 547 10.48 b.109.1.1,d.157.1.8 128581,128582 3griA 424 10.56 1ybqB 390 10.77 1v73A 342 12.24 1z1yA 186 12.61 3djsA 127 13.09 3mkvA 426 13.26 3mag 307 15.93 2k2sB 61 17.12 1x9lA 149 17.49 b.2.10.1 109528 1bhgA 613 17.53 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1w24A 182 18.27 d.159.1.7 120579 1hzoA 271 19.59 e.3.1.1 71092 2vhlA 396 20.05 3il0A 131 20.46 2q8uA 336 20.69 1v39 322 22.46 2piaA 321 22.67 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1yljA 263 23.11 1tvfA 369 26.21 b.105.1.2,e.3.1.1 107358,107359 1z2wA 192 27.25 d.159.1.7 124390 1dx5I 118 27.42 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 3hn3A 613 29.50 2p4bA 295 30.27 1vpt 348 30.85 2pqgA 265 31.43 2v05A 311 31.76 2gpfA 72 32.63 d.100.2.1 147153 2eixA 243 34.94 2k2oA 123 35.33 1qouA 181 36.04 b.17.1.1 23707 2ppeA 343 36.47 b.6.1.3,b.6.1.3 149769,149770 1r5sA 132 37.11 f.50.1.1 111709 3iu1A 383 38.17 3ib0A 345 38.49 2r8cA 426 38.83 b.92.1.9,c.1.9.18 151698,151699 2ww5A 468 39.86 1h09A 338 40.20 b.109.1.1,c.1.8.8 83420,83421 1dyoA 160 40.75 b.18.1.7 23771 1suvE 345 41.06 i.21.1.1 99011 1m40A 263 41.64 e.3.1.1 74437 3lydA 161 42.23 2w18A 356 49.14 1gkrA 458 49.60 b.92.1.3,c.1.9.6 70251,70252 2ww8A 893 50.72 1fm2B 520 51.40 2f6eA 127 52.36 3d0nA 264 53.53 1avwB 171 55.20 b.42.4.1 25599 1wkoA 180 55.34 1xwvA 129 55.57 b.1.18.7 116134 3c12A 138 55.65 2pqiA 243 56.61 1vrbA 342 57.35 b.82.2.11 120450 3ib7A 330 59.04 2pjsA 119 59.46 d.32.1.2 149573 1fnc 314 59.54 2idqA 105 59.73 2bgiA 272 62.55 1jofA 365 63.19 b.69.10.1 71775 3feqA 423 64.58 1kmqA 184 65.25 c.37.1.8 84412 2apqA 139 67.59 2j8gA 339 71.16 b.109.1.1,c.1.8.8 147915,147916 1ugnA 198 71.27 b.1.1.4,b.1.1.4 107828,107829 2ae5B 528 71.90 1dxrH 258 72.51 b.41.1.1,f.23.10.1 25456,43433 3djzA 127 73.01 2vzsA 1032 73.13 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2w86A 147 73.38 1smpI 101 76.57 b.61.2.1 27417 2ok8A 316 77.12 1r64A 481 77.34 b.18.1.20,c.41.1.1 97140,97141 1rzhH 260 80.90 b.41.1.1,f.23.10.1 98162,98163 2nnrA 110 82.67 b.1.26.1 148321 1faeA 629 83.33 a.102.1.2 18837 4pazA 123 84.34 b.6.1.1 22881 1wm1A 317 85.96 c.69.1.7 109405 3fhlA 362 86.12 3fsvA 127 87.16 3hm7A 448 88.32 1zu0A 529 89.11 1g9gA 629 89.14 a.102.1.2 83279