# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000678 2kt7A 102 0.004805 1a8pA 258 0.3091 b.43.4.2,c.25.1.1 25654,31544 2qdxA 257 0.6602 2go2A 163 1.264 2piaA 321 1.522 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1ybqB 390 2.014 2eixA 243 2.021 3griA 424 2.873 3mkvA 426 2.903 1v73A 342 2.958 2gpjA 252 3.400 1q90A 292 4.094 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2ftwA 521 5.530 b.92.1.3,c.1.9.6 134083,134084 3feqA 423 5.813 1dyoA 160 6.563 b.18.1.7 23771 2r8cA 426 6.992 b.92.1.9,c.1.9.18 151698,151699 1zu0A 529 7.578 3gnhA 403 7.836 3hn3A 613 7.937 1w24A 182 8.263 d.159.1.7 120579 2vhlA 396 8.748 3iu1A 383 10.03 3eoiA 124 10.30 1dx5I 118 11.50 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1z2wA 192 11.68 d.159.1.7 124390 2gdnA 267 11.79 2gzbA 166 11.81 2bgiA 272 12.02 4tsvA 150 12.81 b.22.1.1 23860 3hm7A 448 13.66 2qs8A 418 13.76 b.92.1.9,c.1.9.18 151311,151312 2k2oA 123 14.57 1lfoA 127 15.32 b.60.1.2 27223 2uvfA 608 15.41 2vzsA 1032 16.14 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 1fnc 314 16.42 1x9lA 149 17.16 b.2.10.1 109528 1onxA 390 17.35 b.92.1.7,c.1.9.13 87176,87177 1bhgA 613 17.40 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1ra0A 430 18.36 b.92.1.2,c.1.9.5 111756,111757 3c12A 138 19.22 1icmA 131 19.23 b.60.1.2 27174 3mag 307 19.51 2gpfA 72 19.75 d.100.2.1 147153 2v05A 311 21.69 3g5wA 318 23.02 1ifc 132 23.28 1g9gA 629 24.22 a.102.1.2 83279 1faeA 629 24.23 a.102.1.2 18837 2ij2A 470 24.69 a.104.1.1 137449 1v39 322 24.78 2f6eA 127 25.55 1ugnA 198 26.07 b.1.1.4,b.1.1.4 107828,107829 2v43A 303 26.46 1smpI 101 26.96 b.61.2.1 27417 4pazA 123 27.23 b.6.1.1 22881 1h8gA 95 28.17 b.109.1.1 65735 1krhA 338 29.63 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1zo4A 473 30.69 1p6pA 125 30.81 b.60.1.2 87839 2k2sB 61 33.04 1dp0A 1023 33.33 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1fm2B 520 34.07 2bibA 547 34.52 b.109.1.1,d.157.1.8 128581,128582 1yiqA 689 34.58 1vpt 348 35.44 2g3wA 182 35.53 c.52.1.33 147077 2ww5A 468 35.70 2b9uA 176 37.77 1h09A 338 39.69 b.109.1.1,c.1.8.8 83420,83421 1zlqA 502 40.04 c.94.1.1 125253 3kweA 213 40.55 1i7pA 274 40.66 b.43.4.2,c.25.1.1 66048,66049 1tw4A 125 40.98 b.60.1.2 112690 3m2tA 359 41.08 2jspA 87 41.44 1gvhA 396 41.58 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1jofA 365 41.78 b.69.10.1 71775 1vr5A 547 42.12 c.94.1.1 120437 1bx1A 314 42.93 b.43.4.2,c.25.1.1 25629,31519 1xwvA 129 43.46 b.1.18.7 116134 2ojhA 297 43.48 2zl8A 638 43.89 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2fctA 313 45.17 b.82.2.9 133282 3jxgA 269 45.27 2kpsA 98 47.10 1z1yA 186 48.38 2ww8A 893 49.14 1avyA 74 49.33 h.1.17.1 45656 1bx7A 55 49.66 g.3.15.1 44355 1hehC 88 50.35 b.2.2.1 60972 2gviA 204 50.49 d.81.3.1,g.39.1.18 147187,147188 1yrrA 382 51.36 b.92.1.5,c.1.9.10 123935,123936 1uiuA 502 52.75 c.94.1.1 99434 1pjxA 314 53.25 b.68.6.1 104167 1ifcA 132 54.12 b.60.1.2 27173 1kbvA 327 54.72 b.6.1.3,b.6.1.3 68395,68396 3adrA 261 57.61 1gkrA 458 57.73 b.92.1.3,c.1.9.6 70251,70252 2ftbA 125 58.26 b.60.1.2 134057 2zwnA 339 59.07 2nooA 502 62.33 3ah2A 288 63.14 2j8gA 339 63.35 b.109.1.1,c.1.8.8 147915,147916 3d0nA 264 63.57 2ae5B 528 63.71 1ox3A 109 64.24 h.1.17.1 93668 3ic8A 310 64.88 1kmqA 184 65.93 c.37.1.8 84412 1suvE 345 66.30 i.21.1.1 99011 2qedA 258 66.83 d.157.1.2 150676 2aukA 190 67.71 2ahxA 617 67.91 1ci3M 249 68.06 b.2.6.1,b.84.2.2 22480,28266 2hfxA 260 69.37 1v1hA 103 69.57 b.83.1.1,h.1.17.1 108243,108244 3k1tA 432 70.03 3rabA 169 70.12 c.37.1.8 32018 2ppeA 343 70.35 b.6.1.3,b.6.1.3 149769,149770 1vyoA 128 71.01 2yz8A 103 72.73 1m40A 263 73.49 e.3.1.1 74437 1c3gA 170 74.64 b.4.1.1,b.4.1.1 22831,22832 2v5mA 388 76.06 1k6wA 426 76.26 b.92.1.2,c.1.9.5 68236,68237 1rwiA 270 76.59 b.68.9.1 97987 1w6gA 646 76.71 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 3e5zA 296 77.45 1gkpA 458 77.73 b.92.1.3,c.1.9.6 70231,70232 7odcA 424 77.94 b.49.2.3,c.1.6.1 26488,28650 1m7bA 184 78.37 c.37.1.8 74572 1uzkA 162 80.12 g.3.11.1,g.3.11.1,g.23.1.1 119806,119807,119808 3b34A 891 80.47 1e30A 155 80.82 b.6.1.1 23016 1s95A 333 80.96 d.159.1.3 105375 3lygA 120 81.24 1npeA 267 81.64 b.68.5.1 92032 2obwA 258 81.76 3lydA 161 82.40 2c3vA 102 82.94 2p4bA 295 84.12 1uc2A 481 84.38 d.261.1.1 99161 1hicA 51 84.51 g.3.15.2 44371 2ot9A 180 84.72 c.52.1.33 149009 2d1wA 638 85.82 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1bhe 376 86.54 2rf5A 258 87.14 1jb9A 316 87.20 b.43.4.2,c.25.1.1 62840,62841 1zpuA 534 88.69 2gimA 106 88.77 b.6.1.1 135244 1ejxA 100 88.97 d.8.1.1 83182 1oi6A 205 89.38 b.82.1.1 103940