# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000901 2kt7A 102 0.03414 1a8pA 258 1.219 b.43.4.2,c.25.1.1 25654,31544 2go2A 163 2.543 2qdxA 257 2.855 1ybqB 390 3.706 2gpjA 252 4.144 2qs8A 418 4.573 b.92.1.9,c.1.9.18 151311,151312 3ic8A 310 8.560 2gdnA 267 9.142 2gzbA 166 10.84 1v73A 342 12.09 2vhlA 396 13.71 3mag 307 14.13 2piaA 321 14.35 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3griA 424 14.96 1v39 322 15.59 1w24A 182 15.96 d.159.1.7 120579 1yljA 263 16.31 3il0A 131 20.68 1hzoA 271 21.65 e.3.1.1 71092 1fnc 314 22.46 2k2sB 61 23.56 1vpt 348 24.46 1x9lA 149 24.95 b.2.10.1 109528 2q8uA 336 25.12 3mkvA 426 25.74 1gkrA 458 25.97 b.92.1.3,c.1.9.6 70251,70252 1m40A 263 26.69 e.3.1.1 74437 2bgiA 272 26.86 2eixA 243 27.54 3hn3A 613 28.05 1z2wA 192 28.14 d.159.1.7 124390 1suvE 345 30.83 i.21.1.1 99011 2ok8A 316 32.24 1r5sA 132 32.26 f.50.1.1 111709 1bx1A 314 32.32 b.43.4.2,c.25.1.1 25629,31519 3d0nA 264 34.05 3ib0A 345 34.34 2bibA 547 35.15 b.109.1.1,d.157.1.8 128581,128582 2pqgA 265 37.41 3hm7A 448 38.01 2nmxA 260 38.30 b.74.1.1 138382 1dx5I 118 38.39 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1i2sA 282 40.35 e.3.1.1 71104 1ra0A 430 41.14 b.92.1.2,c.1.9.5 111756,111757 1avwB 171 43.90 b.42.4.1 25599 1dyoA 160 44.55 b.18.1.7 23771 2oktA 342 45.27 1onxA 390 46.44 b.92.1.7,c.1.9.13 87176,87177 2hfxA 260 46.83 2k2oA 123 47.14 2gpfA 72 49.77 d.100.2.1 147153 2idqA 105 51.10 1qouA 181 52.76 b.17.1.1 23707 1bhgA 613 53.06 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2nnrA 110 54.53 b.1.26.1 148321 1q90A 292 55.71 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2fctA 313 55.72 b.82.2.9 133282 2ww5A 468 56.96 2rf5A 258 58.19 2j8gA 339 60.85 b.109.1.1,c.1.8.8 147915,147916 2r8cA 426 61.40 b.92.1.9,c.1.9.18 151698,151699 1xwvA 129 65.26 b.1.18.7 116134 4pazA 123 65.84 b.6.1.1 22881 1faeA 629 66.23 a.102.1.2 18837 3jszA 525 68.32 1g9gA 629 69.24 a.102.1.2 83279 1cnv 299 70.18 3c12A 138 70.48 2i4lA 458 71.11 3iu1A 383 73.83 3g5wA 318 75.05 1vrbA 342 76.47 b.82.2.11 120450 2jspA 87 76.89 1dp0A 1023 77.27 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 3dsgA 99 77.39 3djsA 127 78.30 1e30A 155 78.64 b.6.1.1 23016 1k6wA 426 78.90 b.92.1.2,c.1.9.5 68236,68237 1isuA 62 79.49 g.35.1.1 44978 3m2tA 359 81.84 2p4bA 295 83.32 2wzgA 525 83.36 3ib7A 330 83.73 1h09A 338 85.57 b.109.1.1,c.1.8.8 83420,83421 2f6eA 127 86.67 1ugnA 198 87.99 b.1.1.4,b.1.1.4 107828,107829 2ftwA 521 88.28 b.92.1.3,c.1.9.6 134083,134084 2v05A 311 88.54 2b9uA 176 88.58 3jqqA 316 88.64