# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000666		
2kt7A	102	0.02879		
1a8pA	258	1.567	b.43.4.2,c.25.1.1	25654,31544
1ybqB	390	2.595		
2go2A	163	3.220		
2qs8A	418	3.686	b.92.1.9,c.1.9.18	151311,151312
2qdxA	257	4.000		
2gpjA	252	4.604		
2gdnA	267	7.589		
1v73A	342	7.911		
2gzbA	166	8.847		
3ic8A	310	8.967		
3il0A	131	10.97		
3griA	424	11.49		
2vhlA	396	12.60		
3mag	307	14.07		
1v39	322	16.55		
2piaA	321	16.97	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1w24A	182	20.54	d.159.1.7	120579
1yljA	263	21.24		
3mkvA	426	21.59		
2k2sB	61	21.59		
1fnc	314	21.70		
1hzoA	271	22.36	e.3.1.1	71092
1vpt	348	22.51		
1gkrA	458	24.54	b.92.1.3,c.1.9.6	70251,70252
1x9lA	149	25.24	b.2.10.1	109528
1r5sA	132	26.59	f.50.1.1	111709
2q8uA	336	27.42		
2bibA	547	27.73	b.109.1.1,d.157.1.8	128581,128582
1bx1A	314	29.61	b.43.4.2,c.25.1.1	25629,31519
2bgiA	272	32.08		
2ok8A	316	32.68		
1suvE	345	33.15	i.21.1.1	99011
2eixA	243	33.47		
3hn3A	613	33.61		
1m40A	263	33.85	e.3.1.1	74437
3hm7A	448	33.97		
1dyoA	160	35.06	b.18.1.7	23771
1onxA	390	35.77	b.92.1.7,c.1.9.13	87176,87177
1ra0A	430	36.16	b.92.1.2,c.1.9.5	111756,111757
2gpfA	72	36.61	d.100.2.1	147153
2k2oA	123	38.42		
3ib0A	345	38.86		
2nmxA	260	39.27	b.74.1.1	138382
3d0nA	264	39.85		
1dx5I	118	40.33	g.3.11.1,g.3.11.1,g.3.11.1	44302,44303,44304
1z2wA	192	40.65	d.159.1.7	124390
2ww5A	468	41.59		
2pqgA	265	42.49		
1i2sA	282	44.46	e.3.1.1	71104
1avwB	171	45.23	b.42.4.1	25599
2oktA	342	46.22		
1faeA	629	48.54	a.102.1.2	18837
1g9gA	629	49.84	a.102.1.2	83279
2j8gA	339	50.01	b.109.1.1,c.1.8.8	147915,147916
2nnrA	110	50.55	b.1.26.1	148321
1bhgA	613	52.85	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2fctA	313	54.25	b.82.2.9	133282
3dsgA	99	54.74		
1qouA	181	55.23	b.17.1.1	23707
2idqA	105	55.34		
2r8cA	426	57.55	b.92.1.9,c.1.9.18	151698,151699
2ftwA	521	59.83	b.92.1.3,c.1.9.6	134083,134084
2hfxA	260	60.78		
2jspA	87	61.30		
1q90A	292	62.24	b.2.6.1,b.84.2.2,f.23.23.1	96238,96239,96240
1h09A	338	63.06	b.109.1.1,c.1.8.8	83420,83421
3iu1A	383	65.37		
3fsvA	127	65.91		
3ib7A	330	65.98		
4pazA	123	67.07	b.6.1.1	22881
1zu0A	529	67.65		
1vyoA	128	68.72		
1cnv	299	69.66		
2rf5A	258	70.22		
2i4lA	458	70.51		
2p4bA	295	71.30		
2wzgA	525	72.73		
1k6wA	426	73.85	b.92.1.2,c.1.9.5	68236,68237
1isuA	62	74.52	g.35.1.1	44978
2f6eA	127	74.59		
3jszA	525	76.70		
3djsA	127	76.74		
2kpsA	98	78.74		
2gviA	204	78.93	d.81.3.1,g.39.1.18	147187,147188
2dpkA	152	79.04	b.1.27.1	131616
1vrbA	342	80.81	b.82.2.11	120450
1xwvA	129	83.60	b.1.18.7	116134
3c12A	138	84.34		
2h7wA	131	84.52	b.1.26.1	136225
2bt6A	108	87.03	d.15.4.1	129152
3m2tA	359	87.55		
2b9uA	176	89.19