# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.004496 2kt7A 102 0.03017 2ww8A 893 0.7749 1a8pA 258 1.787 b.43.4.2,c.25.1.1 25654,31544 2gdnA 267 1.941 2qs8A 418 2.187 b.92.1.9,c.1.9.18 151311,151312 1r8nA 185 3.117 b.42.4.1 104851 2qdxA 257 3.615 3fm0A 345 5.359 2go2A 163 6.184 3ic8A 310 6.425 3g5wA 318 6.847 1hc7A 477 6.859 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1r64A 481 7.955 b.18.1.20,c.41.1.1 97140,97141 1hzoA 271 8.212 e.3.1.1 71092 1yljA 263 8.534 2gzbA 166 8.556 1dp0A 1023 8.691 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1b7gO 340 9.879 c.2.1.3,d.81.1.1 29992,39907 1jiwI 106 10.75 b.61.2.1 63078 3fwmA 751 12.54 2piaA 321 12.71 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1aym1 285 15.88 2bgiA 272 17.34 1v39 322 17.70 1qorA 327 18.68 b.35.1.2,c.2.1.1 24766,29782 1pguA 615 19.45 b.69.4.1,b.69.4.1 88069,88070 1o6gA 710 21.55 b.69.7.1,c.69.1.4 81087,81088 1gkrA 458 22.73 b.92.1.3,c.1.9.6 70251,70252 3hbrA 265 22.77 1h09A 338 23.49 b.109.1.1,c.1.8.8 83420,83421 2nnrA 110 23.73 b.1.26.1 148321 3lydA 161 24.69 1uc2A 481 25.49 d.261.1.1 99161 1iysA 262 25.89 e.3.1.1 90723 2g9zA 348 27.14 3il0A 131 27.58 1w24A 182 27.78 d.159.1.7 120579 1p9bA 442 29.84 c.37.1.10 94385 1x9lA 149 30.38 b.2.10.1 109528 1m40A 263 31.20 e.3.1.1 74437 2p74A 263 33.07 1fnc 314 33.87 2gpfA 72 34.01 d.100.2.1 147153 2iufA 688 34.27 3bm4A 210 34.88 3gfcA 425 35.64 2fctA 313 36.21 b.82.2.9 133282 3jz7A 214 36.41 3e35A 325 36.47 1pjxA 314 36.59 b.68.6.1 104167 3g4pA 244 37.76 1jvbA 347 40.03 b.35.1.2,c.2.1.1 77181,77182 3djsA 127 40.62 3ehmA 532 40.72 3griA 424 42.65 1i7pA 274 43.00 b.43.4.2,c.25.1.1 66048,66049 1z1yA 186 43.06 2b26A 173 43.57 b.4.1.1,b.4.1.1 127701,127702 1kevA 351 44.26 b.35.1.2,c.2.1.1 24749,29765 3b34A 891 45.63 3dlqR 211 46.21 1vbiA 344 49.35 1zu0A 529 51.10 3d0nA 264 51.52 2porA 301 52.29 f.4.3.1 43759 1jqbA 351 52.75 b.35.1.2,c.2.1.1 77151,77152 1gweA 503 54.37 e.5.1.1 70667 1ivyA 452 56.05 c.69.1.5 34654 2w39A 298 56.70 2h7wA 131 58.86 b.1.26.1 136225 1zo4A 473 59.06 3k1wA 341 59.69 3drfA 590 60.38 2j8gA 339 60.87 b.109.1.1,c.1.8.8 147915,147916 2gimA 106 60.90 b.6.1.1 135244 1gxjA 186 61.22 d.215.1.1 70707 1pieA 419 61.88 d.14.1.5,d.58.26.7 94706,94707 2bt6A 108 63.21 d.15.4.1 129152 3elqA 571 63.56 2k2sB 61 64.52 1vhoA 346 66.13 b.49.3.1,c.56.5.4 100694,100695 1wyuA 438 68.29 c.67.1.7 121452 3c12A 138 69.99 2w2xD 124 70.27 1f97A 212 70.84 b.1.1.1,b.1.1.4 19763,21764 1bsgA 266 72.77 e.3.1.1 42729 2je8A 848 73.16 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 2bb6A 414 73.59 3djzA 127 73.86 2k2oA 123 74.33 2yy3A 91 74.43 1nj4A 363 74.67 b.105.1.1,e.3.1.1 80545,80546 1t17A 148 75.63 d.129.3.6 112215 2ixeA 271 75.76 4pazA 123 78.92 b.6.1.1 22881 2b9uA 176 79.49 1gbgA 214 80.04 b.29.1.2 24171 1azwA 313 81.86 c.69.1.7 34658 1h8gA 95 83.90 b.109.1.1 65735 3dueA 127 84.29 d.98.2.1 157865 1qfmA 710 84.95 b.69.7.1,c.69.1.4 27673,34641 2hx0A 154 85.08 d.290.1.3 136830 1vpt 348 85.16 2q8uA 336 86.71 3f65A 224 87.13 1sh7A 284 88.08 1xrjA 261 88.59 c.37.1.6 122256 1dyoA 160 88.83 b.18.1.7 23771 3kweA 213 89.05 3hm7A 448 89.42