# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000616 2kt7A 102 0.01088 1a8pA 258 2.230 b.43.4.2,c.25.1.1 25654,31544 2go2A 163 2.993 1ybqB 390 3.092 2qs8A 418 3.515 b.92.1.9,c.1.9.18 151311,151312 1v73A 342 5.802 3griA 424 6.356 2qdxA 257 6.557 2gpjA 252 6.559 2gdnA 267 8.825 2vhlA 396 10.21 1gkrA 458 10.68 b.92.1.3,c.1.9.6 70251,70252 2gzbA 166 10.77 3ic8A 310 12.36 2k2sB 61 18.37 3mag 307 21.03 1hzoA 271 21.25 e.3.1.1 71092 1v39 322 21.53 3mkvA 426 21.60 3hm7A 448 25.25 2piaA 321 25.27 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2q8uA 336 25.68 1r5sA 132 27.70 f.50.1.1 111709 1vpt 348 29.15 1yljA 263 29.42 3d0nA 264 29.92 2gpfA 72 29.96 d.100.2.1 147153 1fnc 314 31.37 3djsA 127 33.72 1ra0A 430 33.73 b.92.1.2,c.1.9.5 111756,111757 2gviA 204 35.02 d.81.3.1,g.39.1.18 147187,147188 1z1yA 186 40.28 1x9lA 149 40.62 b.2.10.1 109528 3ib7A 330 41.99 1onxA 390 42.58 b.92.1.7,c.1.9.13 87176,87177 1r64A 481 43.09 b.18.1.20,c.41.1.1 97140,97141 1qouA 181 43.18 b.17.1.1 23707 1dyoA 160 44.51 b.18.1.7 23771 2bgiA 272 44.98 2pqgA 265 45.40 2k2oA 123 46.27 2ok8A 316 47.69 3hn3A 613 47.82 1bhgA 613 48.09 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 3iu1A 383 52.37 2nmxA 260 52.40 b.74.1.1 138382 1dx5I 118 53.46 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1m40A 263 53.71 e.3.1.1 74437 2eixA 243 55.46 2r8cA 426 59.12 b.92.1.9,c.1.9.18 151698,151699 3lydA 161 61.17 2kpsA 98 61.20 1w24A 182 61.49 d.159.1.7 120579 1bx1A 314 62.97 b.43.4.2,c.25.1.1 25629,31519 3il0A 131 63.63 1z2wA 192 64.11 d.159.1.7 124390 1b7gO 340 66.07 c.2.1.3,d.81.1.1 29992,39907 2ww5A 468 66.68 2nnrA 110 68.97 b.1.26.1 148321 2jspA 87 69.15 1tib 269 69.29 2hfxA 260 70.64 1uc2A 481 71.33 d.261.1.1 99161 2bt6A 108 75.34 d.15.4.1 129152 1k6wA 426 76.06 b.92.1.2,c.1.9.5 68236,68237 1cnv 299 77.47 2idqA 105 79.16 4pazA 123 79.64 b.6.1.1 22881 1zu0A 529 80.32 1wkoA 180 80.78 2rf5A 258 83.25 2ftwA 521 83.82 b.92.1.3,c.1.9.6 134083,134084 2h7wA 131 84.67 b.1.26.1 136225 2v05A 311 85.17 1npeA 267 85.32 b.68.5.1 92032 2oktA 342 85.50 2pjsA 119 85.69 d.32.1.2 149573 2apqA 139 85.90 1tvfA 369 86.53 b.105.1.2,e.3.1.1 107358,107359 1h09A 338 88.03 b.109.1.1,c.1.8.8 83420,83421 1isuA 62 88.14 g.35.1.1 44978 1i2sA 282 88.48 e.3.1.1 71104