# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000384		
2kt7A	102	0.01157		
1a8pA	258	1.154	b.43.4.2,c.25.1.1	25654,31544
1ybqB	390	2.620		
2qdxA	257	2.983		
1v73A	342	3.874		
2qs8A	418	4.194	b.92.1.9,c.1.9.18	151311,151312
3griA	424	6.587		
3mkvA	426	7.318		
2gpjA	252	7.469		
2vhlA	396	9.046		
2go2A	163	12.07		
3mag	307	12.20		
2gdnA	267	13.18		
3hn3A	613	15.46		
3ic8A	310	15.60		
1v39	322	16.13		
2piaA	321	16.40	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1gkrA	458	16.71	b.92.1.3,c.1.9.6	70251,70252
1dx5I	118	18.06	g.3.11.1,g.3.11.1,g.3.11.1	44302,44303,44304
3feqA	423	18.56		
2r8cA	426	19.25	b.92.1.9,c.1.9.18	151698,151699
1vpt	348	21.86		
1dyoA	160	21.91	b.18.1.7	23771
2k2sB	61	22.25		
2bgiA	272	23.04		
2eixA	243	23.84		
2gpfA	72	23.96	d.100.2.1	147153
2ftwA	521	24.65	b.92.1.3,c.1.9.6	134083,134084
4tsvA	150	24.84	b.22.1.1	23860
2k2oA	123	25.79		
1fnc	314	26.49		
2jspA	87	27.21		
4pazA	123	28.57	b.6.1.1	22881
1x9lA	149	30.78	b.2.10.1	109528
1bhgA	613	30.99	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3iu1A	383	31.66		
1zu0A	529	31.85		
1r5sA	132	32.36	f.50.1.1	111709
3il0A	131	33.33		
1bx1A	314	33.60	b.43.4.2,c.25.1.1	25629,31519
3hm7A	448	34.51		
2ok8A	316	35.39		
2oktA	342	35.63		
1yljA	263	37.02		
1w24A	182	37.17	d.159.1.7	120579
2q8uA	336	37.29		
3c12A	138	42.81		
2j8gA	339	43.65	b.109.1.1,c.1.8.8	147915,147916
2gzbA	166	45.82		
2pqgA	265	48.38		
1z2wA	192	49.22	d.159.1.7	124390
1hzoA	271	49.60	e.3.1.1	71092
1uc2A	481	50.05	d.261.1.1	99161
1g9gA	629	50.61	a.102.1.2	83279
1q90A	292	50.71	b.2.6.1,b.84.2.2,f.23.23.1	96238,96239,96240
2ww8A	893	50.88		
1qouA	181	52.03	b.17.1.1	23707
1faeA	629	52.06	a.102.1.2	18837
2r0cA	549	53.15		
2kpsA	98	54.36		
1dp0A	1023	55.00	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
1m40A	263	55.56	e.3.1.1	74437
1ugnA	198	56.65	b.1.1.4,b.1.1.4	107828,107829
3djsA	127	57.84		
3d0nA	264	60.46		
2f6eA	127	62.67		
1onxA	390	63.68	b.92.1.7,c.1.9.13	87176,87177
1vyoA	128	64.90		
2rf5A	258	65.60		
3llkA	261	65.98		
2g2nA	114	68.84		
2v05A	311	70.56		
1r64A	481	71.00	b.18.1.20,c.41.1.1	97140,97141
1z1yA	186	72.05		
3jszA	525	75.77		
2gpzA	111	75.78		
3gnhA	403	76.25		
2i4lA	458	76.26		
1tvfA	369	76.84	b.105.1.2,e.3.1.1	107358,107359
1xwvA	129	77.06	b.1.18.7	116134
1bx7A	55	78.20	g.3.15.1	44355
1hehC	88	78.31	b.2.2.1	60972
2idqA	105	79.24		
2g3wA	182	80.65	c.52.1.33	147077
2pg0A	385	80.82		
2ww5A	468	81.12		
2uvfA	608	81.86		
3g5wA	318	83.24		
1suvE	345	84.37	i.21.1.1	99011
2fozA	347	89.79