# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000409		
2kt7A	102	0.05615		
1ybqB	390	11.31		
2qs8A	418	12.63	b.92.1.9,c.1.9.18	151311,151312
3ic8A	310	20.39		
1m40A	263	27.31	e.3.1.1	74437
3mkvA	426	30.92		
1a04A	215	31.05	a.4.6.2,c.23.1.1	16234,31089
2gzbA	166	31.88		
3djsA	127	34.66		
3lhxA	319	38.32		
1hzoA	271	39.36	e.3.1.1	71092
2bt6A	108	41.44	d.15.4.1	129152
2rf5A	258	42.36		
1suvE	345	43.19	i.21.1.1	99011
1gkrA	458	43.24	b.92.1.3,c.1.9.6	70251,70252
1yljA	263	45.21		
2r8cA	426	45.53	b.92.1.9,c.1.9.18	151698,151699
2vhlA	396	46.67		
3llkA	261	50.05		
2fctA	313	53.42	b.82.2.9	133282
3griA	424	53.78		
2dpkA	152	57.05	b.1.27.1	131616
2k2oA	123	57.26		
3ib0A	345	58.50		
2k2sB	61	60.03		
1dx5I	118	62.37	g.3.11.1,g.3.11.1,g.3.11.1	44302,44303,44304
2q2bA	179	63.41		
2ppeA	343	64.22	b.6.1.3,b.6.1.3	149769,149770
1x67A	146	67.55		
1a8pA	258	73.89	b.43.4.2,c.25.1.1	25654,31544
1vbiA	344	74.68		
1zu0A	529	75.77		
2ixtA	310	75.81	c.41.1.1	147828
1xwvA	129	79.67	b.1.18.7	116134
1avwB	171	79.69	b.42.4.1	25599
1dueA	242	80.12	b.47.1.1	76140
1v73A	342	81.21