This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA D A 3 3 NATAA E A 4 4 NATAA D A 5 5 NATAA A A 6 6 NATAA T A 7 7 NATAA I A 8 8 NATAA T A 9 9 NATAA Y A 10 10 NATAA V A 11 11 NATAA D A 12 12 NATAA D A 13 13 NATAA D A 14 14 NATAA K A 15 15 NATAA G A 16 16 NATAA G A 17 17 NATAA A A 18 18 NATAA Q A 19 19 NATAA V A 20 20 NATAA G A 21 21 NATAA D A 22 22 NATAA I A 23 23 NATAA V A 24 24 NATAA T A 25 25 NATAA V A 26 26 NATAA T A 27 27 NATAA G A 28 28 NATAA K A 29 29 NATAA T A 30 30 NATAA D A 31 31 NATAA D A 32 32 NATAA S A 33 33 NATAA T A 34 34 NATAA T A 35 35 NATAA Y A 36 36 NATAA T A 37 37 NATAA V A 38 38 NATAA T A 39 39 NATAA I A 40 40 NATRO P A 41 41 NATAA D A 42 42 NATAA G A 43 43 NATAA Y A 44 44 NATAA E A 45 45 NATAA Y A 46 46 NATAA V A 47 47 NATAA G A 48 48 NATAA T A 49 49 NATAA D A 50 50 NATAA G A 51 51 NATAA G A 52 52 NATAA V A 53 53 NATAA V A 54 54 NATAA S A 55 55 NATAA S A 56 56 NATAA D A 57 57 NATAA G A 58 58 NATAA K A 59 59 NATAA T A 60 60 NATAA V A 61 61 NATAA T A 62 62 NATAA I A 63 63 NATAA T A 64 64 NATAA F A 65 65 NATAA A A 66 66 NATAA A A 67 67 NATAA D A 68 68 NATAA D A 69 69 NATAA S A 70 70 NATAA D A 71 71 NATAA N A 72 72 NATAA V A 73 73 NATAA V A 74 74 NATAA I A 75 75 NATAA H A 76 76 NATAA L A 77 77 NATAA K A 78 78 NATAA H A 79 79 NATAA G