PFRMAT SS
TARGET T0565
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0565.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 977
METHOD
MODEL 1
M C 0.499
K C 0.522
K C 0.532
N C 0.478
I T 0.463
L T 0.580
L T 0.538
F T 0.535
Y T 0.511
C T 0.387
F T 0.354
L H 0.661
A H 0.756
T H 0.766
M H 0.788
A H 0.755
A H 0.740
S H 0.635
L H 0.562
K H 0.531
A H 0.497
Q H 0.404
E H 0.329
I C 0.334
R C 0.370
P C 0.321
M T 0.336
P T 0.361
A T 0.517
D T 0.585
S T 0.585
A T 0.360
Y E 0.659
G E 0.899
V E 0.942
V E 0.914
H E 0.863
I E 0.688
S E 0.469
V E 0.643
C E 0.766
N E 0.736
L E 0.564
R E 0.448
E C 0.330
E C 0.481
G C 0.459
K T 0.688
F T 0.717
T T 0.653
S T 0.573
G E 0.337
M E 0.583
S E 0.674
T E 0.716
Q E 0.732
A E 0.616
L E 0.451
L T 0.422
G T 0.490
M E 0.519
P E 0.907
V E 0.974
K E 0.972
V E 0.976
L E 0.968
Q E 0.941
Y E 0.825
N T 0.584
G T 0.864
W T 0.675
Y E 0.806
E E 0.951
I E 0.984
Q E 0.980
T E 0.927
P E 0.608
D T 0.865
D T 0.817
Y E 0.695
T E 0.845
G E 0.903
W E 0.875
V E 0.687
H E 0.459
R T 0.327
M T 0.346
V T 0.319
I C 0.332
T E 0.316
P C 0.294
M C 0.433
S C 0.440
K H 0.613
E H 0.668
R H 0.612
Y H 0.581
D H 0.544
E H 0.530
W H 0.441
N H 0.348
R T 0.294
A T 0.360
E C 0.412
K C 0.349
I E 0.697
V E 0.891
V E 0.925
T E 0.894
S E 0.750
H E 0.514
Y E 0.458
G E 0.515
F E 0.631
A E 0.667
Y E 0.588
E E 0.390
K T 0.393
P T 0.494
D T 0.682
E T 0.684
S T 0.569
S T 0.493
Q C 0.432
P E 0.363
V E 0.538
S E 0.633
D E 0.720
V E 0.638
V E 0.443
A T 0.575
G T 0.697
N E 0.478
R E 0.779
L E 0.862
K E 0.799
W E 0.824
E E 0.809
G E 0.739
S E 0.584
K T 0.442
G T 0.600
H T 0.432
F E 0.670
Y E 0.872
Q E 0.931
V E 0.920
S E 0.882
Y E 0.588
P T 0.713
D T 0.822
G T 0.726
R E 0.392
K E 0.705
A E 0.808
Y E 0.817
L E 0.754
S E 0.650
K E 0.462
S E 0.439
I E 0.478
S E 0.475
Q E 0.444
P C 0.347
E C 0.364
A C 0.316
G C 0.317
W C 0.334
R C 0.361
A C 0.369
S C 0.370
L T 0.347
K T 0.363
Q H 0.373
D H 0.471
V H 0.746
E H 0.837
S H 0.876
I H 0.953
I H 0.971
E H 0.957
T H 0.975
A H 0.949
Y H 0.897
S H 0.812
M H 0.466
M T 0.506
G C 0.672
I C 0.441
P E 0.656
Y E 0.917
L E 0.936
W E 0.837
A E 0.637
G E 0.585
T E 0.521
S T 0.522
S T 0.741
K T 0.796
G T 0.677
V C 0.357
D C 0.426
C H 0.960
S H 0.992
G H 0.998
L H 1.000
V H 1.000
R H 1.000
T H 1.000
V H 1.000
L H 0.999
F H 0.998
M H 0.993
H H 0.921
D C 0.954
I C 0.906
I C 0.716
I C 0.605
P C 0.483
R C 0.514
D C 0.522
A H 0.631
S H 0.863
Q H 0.832
Q H 0.864
A H 0.874
Y H 0.833
V H 0.774
G C 0.579
E C 0.523
H C 0.448
I C 0.476
D T 0.496
I T 0.563
A T 0.658
P T 0.662
D C 0.571
F G 0.438
S G 0.515
N G 0.551
V C 0.396
K C 0.540
R C 0.381
G C 0.368
D E 0.567
L E 0.921
V E 0.957
F E 0.934
F E 0.709
G C 0.371
R T 0.472
K T 0.531
A T 0.579
T T 0.561
A T 0.560
E T 0.600
R T 0.535
K T 0.537
E T 0.541
G C 0.390
I E 0.382
S E 0.581
H E 0.908
V E 0.954
G E 0.977
I E 0.987
Y E 0.991
L E 0.960
G E 0.510
N T 0.912
K T 0.827
Q E 0.716
F E 0.956
I E 0.955
H E 0.950
A E 0.873
L E 0.573
G T 0.537
D T 0.674
V T 0.730
H T 0.524
V E 0.653
S E 0.841
S E 0.909
M E 0.901
N E 0.677
P C 0.338
A T 0.495
D T 0.481
Q T 0.329
N H 0.673
Y H 0.705
D H 0.744
E H 0.717
F H 0.708
N H 0.697
T H 0.539
K H 0.454
R C 0.288
L E 0.430
L E 0.666
F E 0.718
A E 0.691
V E 0.560
R C 0.419
F C 0.617
L C 0.517
P C 0.413
Y C 0.413
I C 0.396
N C 0.490
K T 0.482
E T 0.476
K T 0.497
G T 0.461
M C 0.409
N C 0.449
T C 0.509
T C 0.441
N T 0.374
K C 0.341
N C 0.409
P C 0.494
F C 0.512
Y C 0.533
Q C 0.838
END