PFRMAT TS TARGET T0564 AUTHOR SAM-T08-server METHOD This prediction was created by the SAM-T08 server, which uses target METHOD and template HMMs to search a large template library and to align the METHOD target to the templates. Undertaker is then used to choose the most METHOD protein-like models from among the alignments, and to do further METHOD optimization to attempt to remove breaks and clashes. METHOD REMARK 6 REMARK 6 T0564 model 5 Sat May 29 00:00:22 2010 MODEL 5 PARENT N/A ATOM 2 N VAL 10 -5.542 -0.131 -8.002 1.00 0.00 ATOM 3 CA VAL 10 -4.937 -0.388 -9.293 1.00 0.00 ATOM 4 CB VAL 10 -5.866 0.033 -10.446 1.00 0.00 ATOM 5 CG1 VAL 10 -5.181 -0.181 -11.787 1.00 0.00 ATOM 6 CG2 VAL 10 -7.177 -0.738 -10.383 1.00 0.00 ATOM 7 O VAL 10 -3.558 1.546 -9.584 1.00 0.00 ATOM 8 C VAL 10 -3.601 0.334 -9.399 1.00 0.00 ATOM 9 N VAL 11 -2.513 -0.404 -9.272 1.00 0.00 ATOM 10 CA VAL 11 -1.198 0.212 -9.229 1.00 0.00 ATOM 11 CB VAL 11 -0.159 -0.720 -8.578 1.00 0.00 ATOM 12 CG1 VAL 11 1.226 -0.094 -8.633 1.00 0.00 ATOM 13 CG2 VAL 11 -0.549 -1.033 -7.142 1.00 0.00 ATOM 14 O VAL 11 -0.762 -0.173 -11.562 1.00 0.00 ATOM 15 C VAL 11 -0.719 0.613 -10.614 1.00 0.00 ATOM 16 N SER 12 -0.267 1.848 -10.706 1.00 0.00 ATOM 17 CA SER 12 0.198 2.423 -11.949 1.00 0.00 ATOM 18 CB SER 12 -0.312 3.858 -12.100 1.00 0.00 ATOM 19 OG SER 12 -1.725 3.886 -12.220 1.00 0.00 ATOM 20 O SER 12 2.316 1.994 -13.002 1.00 0.00 ATOM 21 C SER 12 1.719 2.383 -11.999 1.00 0.00 ATOM 22 N ASN 13 2.337 2.783 -10.896 1.00 0.00 ATOM 23 CA ASN 13 3.780 2.875 -10.814 1.00 0.00 ATOM 24 CB ASN 13 4.262 4.226 -11.345 1.00 0.00 ATOM 25 CG ASN 13 5.774 4.326 -11.396 1.00 0.00 ATOM 26 ND2 ASN 13 6.282 5.130 -12.323 1.00 0.00 ATOM 27 OD1 ASN 13 6.475 3.688 -10.609 1.00 0.00 ATOM 28 O ASN 13 3.999 3.479 -8.505 1.00 0.00 ATOM 29 C ASN 13 4.246 2.656 -9.383 1.00 0.00 ATOM 30 N LYS 14 4.903 1.537 -9.151 1.00 0.00 ATOM 31 CA LYS 14 5.497 1.272 -7.857 1.00 0.00 ATOM 32 CB LYS 14 5.468 -0.226 -7.551 1.00 0.00 ATOM 33 CG LYS 14 5.984 -0.587 -6.167 1.00 0.00 ATOM 34 CD LYS 14 5.891 -2.084 -5.918 1.00 0.00 ATOM 35 CE LYS 14 6.436 -2.449 -4.546 1.00 0.00 ATOM 36 NZ LYS 14 6.353 -3.914 -4.287 1.00 0.00 ATOM 37 O LYS 14 7.728 1.450 -8.698 1.00 0.00 ATOM 38 C LYS 14 6.920 1.808 -7.845 1.00 0.00 ATOM 39 N ARG 15 7.212 2.707 -6.927 1.00 0.00 ATOM 40 CA ARG 15 8.546 3.268 -6.821 1.00 0.00 ATOM 41 CB ARG 15 8.730 4.406 -7.828 1.00 0.00 ATOM 42 CG ARG 15 7.758 5.560 -7.644 1.00 0.00 ATOM 43 CD ARG 15 7.577 6.340 -8.935 1.00 0.00 ATOM 44 NE ARG 15 8.825 6.956 -9.381 1.00 0.00 ATOM 45 CZ ARG 15 9.578 6.486 -10.370 1.00 0.00 ATOM 46 NH1 ARG 15 10.697 7.113 -10.707 1.00 0.00 ATOM 47 NH2 ARG 15 9.211 5.390 -11.020 1.00 0.00 ATOM 48 O ARG 15 8.028 3.450 -4.484 1.00 0.00 ATOM 49 C ARG 15 8.794 3.761 -5.400 1.00 0.00 ATOM 50 N GLU 16 9.866 4.517 -5.228 1.00 0.00 ATOM 51 CA GLU 16 10.189 5.132 -3.953 1.00 0.00 ATOM 52 CB GLU 16 10.561 4.064 -2.922 1.00 0.00 ATOM 53 CG GLU 16 11.686 3.141 -3.365 1.00 0.00 ATOM 54 CD GLU 16 13.058 3.696 -3.040 1.00 0.00 ATOM 55 OE1 GLU 16 13.708 4.246 -3.955 1.00 0.00 ATOM 56 OE2 GLU 16 13.484 3.585 -1.871 1.00 0.00 ATOM 57 O GLU 16 11.920 6.172 -5.228 1.00 0.00 ATOM 58 C GLU 16 11.324 6.124 -4.151 1.00 0.00 ATOM 62 N THR 34 11.615 6.923 -3.139 1.00 0.00 ATOM 63 CA THR 34 12.680 7.912 -3.259 1.00 0.00 ATOM 64 CB THR 34 12.152 9.341 -3.031 1.00 0.00 ATOM 65 CG2 THR 34 11.143 9.714 -4.105 1.00 0.00 ATOM 66 OG1 THR 34 11.509 9.418 -1.752 1.00 0.00 ATOM 67 O THR 34 14.822 7.049 -2.651 1.00 0.00 ATOM 68 C THR 34 13.806 7.627 -2.278 1.00 0.00 ATOM 69 N SER 35 13.640 8.032 -1.029 1.00 0.00 ATOM 70 CA SER 35 14.629 7.723 -0.008 1.00 0.00 ATOM 71 CB SER 35 15.352 8.995 0.441 1.00 0.00 ATOM 72 OG SER 35 14.436 9.948 0.952 1.00 0.00 ATOM 73 O SER 35 13.860 5.824 1.224 1.00 0.00 ATOM 74 C SER 35 13.982 7.039 1.186 1.00 0.00 ATOM 75 N MET 36 13.513 7.819 2.138 1.00 0.00 ATOM 76 CA MET 36 12.965 7.261 3.366 1.00 0.00 ATOM 77 CB MET 36 13.274 8.173 4.555 1.00 0.00 ATOM 78 CG MET 36 14.758 8.317 4.857 1.00 0.00 ATOM 79 SD MET 36 15.073 9.246 6.369 1.00 0.00 ATOM 80 CE MET 36 14.539 10.883 5.878 1.00 0.00 ATOM 81 O MET 36 10.741 6.968 4.229 1.00 0.00 ATOM 82 C MET 36 11.466 7.052 3.238 1.00 0.00 ATOM 83 N ARG 37 11.016 6.918 1.999 1.00 0.00 ATOM 84 CA ARG 37 9.598 6.808 1.693 1.00 0.00 ATOM 85 CB ARG 37 8.992 8.193 1.452 1.00 0.00 ATOM 86 CG ARG 37 7.481 8.192 1.296 1.00 0.00 ATOM 87 CD ARG 37 6.930 9.608 1.229 1.00 0.00 ATOM 88 NE ARG 37 7.367 10.307 0.022 1.00 0.00 ATOM 89 CZ ARG 37 7.113 11.587 -0.230 1.00 0.00 ATOM 90 NH1 ARG 37 7.550 12.140 -1.355 1.00 0.00 ATOM 91 NH2 ARG 37 6.423 12.312 0.639 1.00 0.00 ATOM 92 O ARG 37 10.243 5.894 -0.426 1.00 0.00 ATOM 93 C ARG 37 9.402 5.913 0.476 1.00 0.00 ATOM 94 N TYR 38 8.325 5.146 0.481 1.00 0.00 ATOM 95 CA TYR 38 7.868 4.451 -0.711 1.00 0.00 ATOM 96 CB TYR 38 7.293 3.081 -0.346 1.00 0.00 ATOM 97 CG TYR 38 8.338 1.999 -0.197 1.00 0.00 ATOM 98 CD1 TYR 38 8.891 1.386 -1.315 1.00 0.00 ATOM 99 CD2 TYR 38 8.767 1.591 1.060 1.00 0.00 ATOM 100 CE1 TYR 38 9.847 0.395 -1.188 1.00 0.00 ATOM 101 CE2 TYR 38 9.721 0.603 1.205 1.00 0.00 ATOM 102 CZ TYR 38 10.261 0.004 0.067 1.00 0.00 ATOM 103 OH TYR 38 11.211 -0.981 0.196 1.00 0.00 ATOM 104 O TYR 38 6.167 6.115 -0.777 1.00 0.00 ATOM 105 C TYR 38 6.838 5.311 -1.417 1.00 0.00 ATOM 106 N GLU 39 6.721 5.146 -2.722 1.00 0.00 ATOM 107 CA GLU 39 5.771 5.920 -3.502 1.00 0.00 ATOM 108 CB GLU 39 6.469 7.102 -4.178 1.00 0.00 ATOM 109 CG GLU 39 7.036 8.126 -3.207 1.00 0.00 ATOM 110 CD GLU 39 7.717 9.282 -3.910 1.00 0.00 ATOM 111 OE1 GLU 39 8.185 9.089 -5.053 1.00 0.00 ATOM 112 OE2 GLU 39 7.784 10.380 -3.321 1.00 0.00 ATOM 113 O GLU 39 5.654 4.753 -5.601 1.00 0.00 ATOM 114 C GLU 39 5.092 5.039 -4.543 1.00 0.00 ATOM 115 N ALA 40 3.887 4.595 -4.223 1.00 0.00 ATOM 116 CA ALA 40 3.149 3.688 -5.091 1.00 0.00 ATOM 117 CB ALA 40 2.675 2.474 -4.308 1.00 0.00 ATOM 118 O ALA 40 0.910 4.551 -5.118 1.00 0.00 ATOM 119 C ALA 40 1.961 4.396 -5.739 1.00 0.00 ATOM 120 N SER 41 2.143 4.845 -6.975 1.00 0.00 ATOM 121 CA SER 41 1.069 5.477 -7.730 1.00 0.00 ATOM 122 CB SER 41 1.612 6.093 -9.021 1.00 0.00 ATOM 123 OG SER 41 2.728 6.926 -8.758 1.00 0.00 ATOM 124 O SER 41 0.253 3.428 -8.651 1.00 0.00 ATOM 125 C SER 41 -0.016 4.460 -8.038 1.00 0.00 ATOM 126 N PHE 42 -1.230 4.738 -7.595 1.00 0.00 ATOM 127 CA PHE 42 -2.349 3.844 -7.826 1.00 0.00 ATOM 128 CB PHE 42 -2.634 3.007 -6.578 1.00 0.00 ATOM 129 CG PHE 42 -3.068 3.817 -5.390 1.00 0.00 ATOM 130 CD1 PHE 42 -4.367 3.739 -4.916 1.00 0.00 ATOM 131 CD2 PHE 42 -2.179 4.660 -4.747 1.00 0.00 ATOM 132 CE1 PHE 42 -4.767 4.484 -3.825 1.00 0.00 ATOM 133 CE2 PHE 42 -2.579 5.407 -3.656 1.00 0.00 ATOM 134 CZ PHE 42 -3.866 5.320 -3.193 1.00 0.00 ATOM 135 O PHE 42 -3.764 5.779 -7.865 1.00 0.00 ATOM 136 C PHE 42 -3.593 4.617 -8.230 1.00 0.00 ATOM 137 N LYS 43 -4.446 3.965 -8.991 1.00 0.00 ATOM 138 CA LYS 43 -5.763 4.490 -9.272 1.00 0.00 ATOM 139 CB LYS 43 -6.232 4.041 -10.657 1.00 0.00 ATOM 140 CG LYS 43 -7.571 4.629 -11.078 1.00 0.00 ATOM 141 CD LYS 43 -7.957 4.175 -12.476 1.00 0.00 ATOM 142 CE LYS 43 -9.309 4.737 -12.884 1.00 0.00 ATOM 143 NZ LYS 43 -9.702 4.297 -14.252 1.00 0.00 ATOM 144 O LYS 43 -6.920 2.809 -8.023 1.00 0.00 ATOM 145 C LYS 43 -6.697 4.011 -8.175 1.00 0.00 ATOM 149 N LEU 45 -7.219 4.946 -7.403 1.00 0.00 ATOM 150 CA LEU 45 -8.013 4.613 -6.226 1.00 0.00 ATOM 151 CB LEU 45 -8.080 5.804 -5.269 1.00 0.00 ATOM 152 CG LEU 45 -6.753 6.247 -4.646 1.00 0.00 ATOM 153 CD1 LEU 45 -6.944 7.508 -3.816 1.00 0.00 ATOM 154 CD2 LEU 45 -6.163 5.136 -3.792 1.00 0.00 ATOM 155 O LEU 45 -10.223 3.832 -5.725 1.00 0.00 ATOM 156 C LEU 45 -9.427 4.174 -6.599 1.00 0.00 ATOM 157 N ASN 46 -9.741 4.200 -7.891 1.00 0.00 ATOM 158 CA ASN 46 -11.087 3.881 -8.338 1.00 0.00 ATOM 159 CB ASN 46 -11.620 2.651 -7.603 1.00 0.00 ATOM 160 CG ASN 46 -10.802 1.406 -7.880 1.00 0.00 ATOM 161 ND2 ASN 46 -10.458 0.676 -6.826 1.00 0.00 ATOM 162 OD1 ASN 46 -10.484 1.105 -9.031 1.00 0.00 ATOM 163 O ASN 46 -13.111 5.105 -8.723 1.00 0.00 ATOM 164 C ASN 46 -12.025 5.056 -8.152 1.00 0.00 ATOM 165 N GLY 47 -11.573 6.010 -7.356 1.00 0.00 ATOM 166 CA GLY 47 -12.340 7.203 -7.035 1.00 0.00 ATOM 167 O GLY 47 -12.642 9.382 -8.022 1.00 0.00 ATOM 168 C GLY 47 -12.064 8.297 -8.066 1.00 0.00 ATOM 169 N GLY 48 -11.178 7.989 -9.006 1.00 0.00 ATOM 170 CA GLY 48 -10.775 8.961 -10.002 1.00 0.00 ATOM 171 O GLY 48 -8.796 10.202 -10.507 1.00 0.00 ATOM 172 C GLY 48 -9.438 9.579 -9.664 1.00 0.00 ATOM 173 N LEU 49 -9.021 9.394 -8.423 1.00 0.00 ATOM 174 CA LEU 49 -7.768 9.921 -7.938 1.00 0.00 ATOM 175 CB LEU 49 -7.881 10.296 -6.459 1.00 0.00 ATOM 176 CG LEU 49 -8.911 11.372 -6.109 1.00 0.00 ATOM 177 CD1 LEU 49 -8.983 11.577 -4.604 1.00 0.00 ATOM 178 CD2 LEU 49 -8.578 12.681 -6.807 1.00 0.00 ATOM 179 O LEU 49 -6.839 7.705 -7.973 1.00 0.00 ATOM 180 C LEU 49 -6.645 8.910 -8.146 1.00 0.00 ATOM 181 N GLU 50 -5.486 9.415 -8.527 1.00 0.00 ATOM 182 CA GLU 50 -4.318 8.586 -8.741 1.00 0.00 ATOM 183 CB GLU 50 -3.794 8.754 -10.168 1.00 0.00 ATOM 184 CG GLU 50 -2.609 7.865 -10.504 1.00 0.00 ATOM 185 CD GLU 50 -2.149 8.024 -11.940 1.00 0.00 ATOM 186 OE1 GLU 50 -1.902 9.173 -12.360 1.00 0.00 ATOM 187 OE2 GLU 50 -2.039 7.000 -12.646 1.00 0.00 ATOM 188 O GLU 50 -2.374 9.777 -7.972 1.00 0.00 ATOM 189 C GLU 50 -3.252 8.951 -7.720 1.00 0.00 ATOM 190 N LYS 51 -3.358 8.332 -6.562 1.00 0.00 ATOM 191 CA LYS 51 -2.531 8.678 -5.424 1.00 0.00 ATOM 192 CB LYS 51 -3.300 8.464 -4.118 1.00 0.00 ATOM 193 CG LYS 51 -2.545 8.904 -2.874 1.00 0.00 ATOM 194 CD LYS 51 -3.396 8.736 -1.625 1.00 0.00 ATOM 195 CE LYS 51 -2.632 9.156 -0.379 1.00 0.00 ATOM 196 NZ LYS 51 -3.455 9.005 0.853 1.00 0.00 ATOM 197 O LYS 51 -1.266 6.683 -5.765 1.00 0.00 ATOM 198 C LYS 51 -1.259 7.861 -5.427 1.00 0.00 ATOM 199 N THR 52 -0.181 8.492 -5.042 1.00 0.00 ATOM 200 CA THR 52 1.108 7.832 -4.971 1.00 0.00 ATOM 201 CB THR 52 2.222 8.702 -5.582 1.00 0.00 ATOM 202 CG2 THR 52 3.562 7.986 -5.503 1.00 0.00 ATOM 203 OG1 THR 52 1.925 8.967 -6.959 1.00 0.00 ATOM 204 O THR 52 2.033 8.310 -2.811 1.00 0.00 ATOM 205 C THR 52 1.424 7.506 -3.514 1.00 0.00 ATOM 206 N PHE 53 0.971 6.334 -3.063 1.00 0.00 ATOM 207 CA PHE 53 1.066 5.940 -1.656 1.00 0.00 ATOM 208 CB PHE 53 0.688 4.467 -1.486 1.00 0.00 ATOM 209 CG PHE 53 -0.778 4.240 -1.250 1.00 0.00 ATOM 210 CD1 PHE 53 -1.315 4.348 0.020 1.00 0.00 ATOM 211 CD2 PHE 53 -1.620 3.920 -2.301 1.00 0.00 ATOM 212 CE1 PHE 53 -2.665 4.138 0.236 1.00 0.00 ATOM 213 CE2 PHE 53 -2.969 3.712 -2.086 1.00 0.00 ATOM 214 CZ PHE 53 -3.492 3.820 -0.824 1.00 0.00 ATOM 215 O PHE 53 3.440 5.653 -1.590 1.00 0.00 ATOM 216 C PHE 53 2.451 6.176 -1.086 1.00 0.00 ATOM 217 N ARG 54 2.497 6.959 -0.019 1.00 0.00 ATOM 218 CA ARG 54 3.750 7.384 0.561 1.00 0.00 ATOM 219 CB ARG 54 3.731 8.889 0.835 1.00 0.00 ATOM 220 CG ARG 54 3.603 9.745 -0.414 1.00 0.00 ATOM 221 CD ARG 54 3.642 11.227 -0.075 1.00 0.00 ATOM 222 NE ARG 54 3.508 12.065 -1.264 1.00 0.00 ATOM 223 CZ ARG 54 3.550 13.394 -1.250 1.00 0.00 ATOM 224 NH1 ARG 54 3.418 14.072 -2.381 1.00 0.00 ATOM 225 NH2 ARG 54 3.721 14.039 -0.105 1.00 0.00 ATOM 226 O ARG 54 3.652 7.027 2.945 1.00 0.00 ATOM 227 C ARG 54 4.023 6.615 1.838 1.00 0.00 ATOM 228 N LEU 55 4.653 5.477 1.669 1.00 0.00 ATOM 229 CA LEU 55 4.980 4.626 2.783 1.00 0.00 ATOM 230 CB LEU 55 5.010 3.160 2.346 1.00 0.00 ATOM 231 CG LEU 55 3.707 2.597 1.772 1.00 0.00 ATOM 232 CD1 LEU 55 3.904 1.165 1.297 1.00 0.00 ATOM 233 CD2 LEU 55 2.592 2.664 2.804 1.00 0.00 ATOM 234 O LEU 55 7.369 4.612 2.902 1.00 0.00 ATOM 235 C LEU 55 6.313 5.043 3.364 1.00 0.00 ATOM 236 N GLN 56 6.258 5.956 4.323 1.00 0.00 ATOM 237 CA GLN 56 7.435 6.321 5.085 1.00 0.00 ATOM 238 CB GLN 56 7.068 7.307 6.197 1.00 0.00 ATOM 239 CG GLN 56 8.242 7.730 7.063 1.00 0.00 ATOM 240 CD GLN 56 9.258 8.560 6.303 1.00 0.00 ATOM 241 OE1 GLN 56 8.916 9.576 5.697 1.00 0.00 ATOM 242 NE2 GLN 56 10.515 8.130 6.332 1.00 0.00 ATOM 243 O GLN 56 7.397 4.343 6.405 1.00 0.00 ATOM 244 C GLN 56 8.037 5.053 5.632 1.00 0.00 ATOM 245 N ALA 57 9.228 4.736 5.180 1.00 0.00 ATOM 246 CA ALA 57 9.874 3.514 5.608 1.00 0.00 ATOM 247 CB ALA 57 11.199 3.331 4.885 1.00 0.00 ATOM 248 O ALA 57 9.903 4.586 7.753 1.00 0.00 ATOM 249 C ALA 57 10.079 3.544 7.119 1.00 0.00 ATOM 250 N GLN 58 10.477 2.415 7.686 1.00 0.00 ATOM 251 CA GLN 58 10.669 2.300 9.136 1.00 0.00 ATOM 252 CB GLN 58 10.746 0.829 9.550 1.00 0.00 ATOM 253 CG GLN 58 9.472 0.043 9.286 1.00 0.00 ATOM 254 CD GLN 58 8.287 0.573 10.070 1.00 0.00 ATOM 255 OE1 GLN 58 8.341 0.684 11.294 1.00 0.00 ATOM 256 NE2 GLN 58 7.211 0.899 9.363 1.00 0.00 ATOM 257 O GLN 58 12.609 2.695 10.529 1.00 0.00 ATOM 258 C GLN 58 11.941 3.048 9.562 1.00 0.00 ATOM 259 N GLN 59 12.228 4.125 8.837 1.00 0.00 ATOM 260 CA GLN 59 13.449 4.904 8.985 1.00 0.00 ATOM 261 CB GLN 59 13.700 5.750 7.734 1.00 0.00 ATOM 262 CG GLN 59 13.854 4.939 6.458 1.00 0.00 ATOM 263 CD GLN 59 15.035 3.992 6.509 1.00 0.00 ATOM 264 OE1 GLN 59 16.187 4.423 6.569 1.00 0.00 ATOM 265 NE2 GLN 59 14.754 2.694 6.483 1.00 0.00 ATOM 266 O GLN 59 14.364 6.425 10.603 1.00 0.00 ATOM 267 C GLN 59 13.382 5.793 10.210 1.00 0.00 TER END