# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcqA	357	14.05	b.49.2.2,c.1.6.1	104882,104883
3e6eA	371	15.56		
2axhA	242	16.08	b.1.1.1,b.1.1.2	127490,127491
1djxA	624	16.93	a.39.1.7,b.7.1.1,c.1.18.1	17342,23159,29587
3iuzA	340	17.54		
1k42A	168	18.44	b.18.1.14	72032
2vlmE	244	18.92	b.1.1.1,b.1.1.2	153293,153294
3kd4A	506	26.22		
1qasA	622	26.90	a.39.1.7,b.7.1.1,c.1.18.1	17340,23157,29585
2vd8A	391	29.44		
2wgoA	98	34.41		
2b0rA	202	36.54		
2nsqA	155	39.48		
2tnfA	156	40.24	b.22.1.1	23880
1rlwA	126	41.14	b.7.1.1	23177
2octA	98	41.94		
3e8lC	185	43.06		
1iomA	377	45.54	a.103.1.1	83698
1rj8A	164	46.87	b.22.1.1	97547
1tjxA	159	47.88	b.7.1.2	112465
1aj8A	371	48.19	a.103.1.1	18900
1tv8A	340	48.52	c.1.28.3	107352
3gsnB	243	51.65		
1lf6A	684	52.69	a.102.1.5,b.30.5.5	77918,77919
2oa2A	148	53.68		
2exdA	80	53.82	b.40.12.1	132524
1yrzA	528	54.16	b.29.1.23,b.67.2.1	123948,123949
1kxgA	152	54.79	b.22.1.1	73145
3c2uA	538	55.03		
2re9A	181	55.16		
1djxB	624	56.80	a.39.1.7,b.7.1.1,c.1.18.1	17343,23160,29588
3hurA	395	58.63		
4tsvA	150	64.82	b.22.1.1	23860
1a59A	378	65.59	a.103.1.1	18902
1ea2A	131	66.38	d.17.4.3	64860
2vgdA	218	67.57		
1s55A	156	68.61	b.22.1.1	118865
1becA	238	70.84	b.1.1.1,b.1.1.2	20627,21561
1kvkA	395	71.89	d.14.1.5,d.58.26.3	73060,73061
1fnhA	271	74.57	b.1.2.1,b.1.2.1,b.1.2.1	21976,21977,21978
2e7aA	157	75.07		
1lckA	175	75.35	b.34.2.1,d.93.1.1	24552,40421
1owcA	427	75.42	a.103.1.1	104039
1mzyA	333	76.01	b.6.1.3,b.6.1.3	103848,103849
1bd0A	388	76.03	b.49.2.2,c.1.6.1	26480,28642
2nw2B	243	76.39		
1ihjA	98	77.81	b.36.1.1	62382
3co8A	380	77.83		
2gudA	122	79.49	b.77.3.1	135732
1vfsA	386	80.05	b.49.2.2,c.1.6.1	108584,108585
2rjlA	184	81.48		
2ofcA	142	82.54		
2iiaA	131	82.67		
1rqwA	207	83.58	b.25.1.1	97781
1a8mA	157	86.18	b.22.1.1	23868
1dg6A	191	87.28	b.22.1.1	23883
3brdA	477	88.68	b.1.18.1,b.2.5.8,b.42.7.1	155505,155506,155507
2aanA	139	89.03