# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rcqA 357 10.18 b.49.2.2,c.1.6.1 104882,104883 3e6eA 371 10.60 1k42A 168 19.51 b.18.1.14 72032 1yrzA 528 19.91 b.29.1.23,b.67.2.1 123948,123949 1bd0A 388 20.22 b.49.2.2,c.1.6.1 26480,28642 2arcA 164 21.23 b.82.4.1 28148 1iomA 377 22.17 a.103.1.1 83698 1aj8A 371 22.73 a.103.1.1 18900 1s55A 156 22.83 b.22.1.1 118865 3iuzA 340 26.66 1r4uA 301 26.79 d.96.1.4,d.96.1.4 97047,97048 2vd8A 391 28.30 2jjwA 127 28.72 3co8A 380 30.22 3c2uA 538 32.38 2eifA 136 32.51 b.34.5.2,b.40.4.5 24607,25339 2wgoA 98 32.72 1a59A 378 33.64 a.103.1.1 18902 2tnfA 156 33.94 b.22.1.1 23880 1bkb 136 35.29 1owcA 427 36.32 a.103.1.1 104039 2d6mA 159 36.45 1rj8A 164 36.55 b.22.1.1 97547 1vfsA 386 36.96 b.49.2.2,c.1.6.1 108584,108585 2b0rA 202 37.85 2axhA 242 39.34 b.1.1.1,b.1.1.2 127490,127491 1uebA 184 39.37 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2re9A 181 40.55 1becA 238 41.19 b.1.1.1,b.1.1.2 20627,21561 2wjeA 247 41.58 1autL 114 43.38 g.3.11.1,g.3.11.1 44244,44245 2rdkA 109 43.63 1dg6A 191 43.92 b.22.1.1 23883 1lcl 142 45.59 3hurA 395 45.76 1lf6A 684 46.13 a.102.1.5,b.30.5.5 77918,77919 1ky3A 182 47.26 c.37.1.8 73193 3e8lC 185 47.33 1qr4B 186 47.70 b.1.2.1,b.1.2.1 21988,21989 2vlmE 244 48.01 b.1.1.1,b.1.1.2 153293,153294 1iqaA 160 48.61 b.22.1.1 71274 1qh5A 260 49.23 d.157.1.2 42057 2ofcA 142 50.37 1rzuA 485 51.76 c.87.1.8 105140 3f0yA 208 51.79 3brdA 477 52.81 b.1.18.1,b.2.5.8,b.42.7.1 155505,155506,155507 2zx2A 195 53.75 1xel 338 53.90 2p2wA 367 53.98 4tsvA 150 54.22 b.22.1.1 23860 2ibpA 409 54.95 2d1sA 548 55.66 1a3k 137 55.67 2nw2B 243 56.66 1j1qA 261 58.88 d.165.1.1 90768 2k6hA 248 58.91 2f2aB 483 59.38 a.182.1.2,d.128.1.5 132802,132803 1k3pA 426 60.36 a.103.1.1 77237 2jngA 105 64.96 b.34.9.4 148150 2nn8A 138 65.01 b.29.1.3 138392 2exdA 80 65.20 b.40.12.1 132524 1d4vB 163 65.33 b.22.1.1 23884 1a8mA 157 66.90 b.22.1.1 23868 2rjlA 184 68.32 2octA 98 69.41 3hwkA 414 70.28 1wgvA 124 71.33 b.15.1.4 114624 1o12A 376 71.38 b.92.1.5,c.1.9.10 80758,80759 2gwmA 200 72.12 1mgrA 99 72.23 d.1.1.2 79106 1iz6A 138 73.38 b.34.5.2,b.40.4.5 76976,76977 2e7aA 157 75.59 1uxzA 131 76.42 b.18.1.10 100170 2pe4A 424 76.69 1xfcA 384 76.90 3ig9A 78 77.58 2pyeE 242 77.85 1fnhA 271 77.89 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1alyA 146 77.91 b.22.1.1 23856 4pazA 123 78.26 b.6.1.1 22881 1focA 132 78.77 a.3.1.1 15812 2azeB 106 79.75 e.63.1.2 127606 3e53A 480 81.07 1kxgA 152 82.39 b.22.1.1 73145 1ea2A 131 82.80 d.17.4.3 64860 1qr4A 186 83.09 b.1.2.1,b.1.2.1 21986,21987 1is3A 135 84.16 b.29.1.3 76773 2b7uA 257 84.48 1k8tA 510 84.72 e.41.1.1 68316 1rqwA 207 86.20 b.25.1.1 97781 1c9fA 90 86.22 d.15.2.1 37639 3dasA 347 86.53 1vgmA 378 86.77 1bkbA 136 87.22 b.34.5.2,b.40.4.5 24609,25341 3lhoA 267 87.81