# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2axhA	242	6.846	b.1.1.1,b.1.1.2	127490,127491
2vlmE	244	7.770	b.1.1.1,b.1.1.2	153293,153294
1rzuA	485	9.542	c.87.1.8	105140
3iuzA	340	15.01		
3gsnB	243	24.82		
3f0yA	208	28.11		
2pyeE	242	30.64		
1becA	238	33.26	b.1.1.1,b.1.1.2	20627,21561
3e8lC	185	37.10		
2wgoA	98	37.86		
3e6eA	371	40.85		
1iomA	377	44.53	a.103.1.1	83698
2nw2B	243	44.77		
1aj8A	371	45.03	a.103.1.1	18900
1lckA	175	45.37	b.34.2.1,d.93.1.1	24552,40421
2jjwA	127	46.68		
2axjA	242	47.46		
2ofcA	142	47.57		
1rcqA	357	52.47	b.49.2.2,c.1.6.1	104882,104883
1ky3A	182	53.28	c.37.1.8	73193
1tjxA	159	54.62	b.7.1.2	112465
2rdkA	109	55.70		
2b0rA	202	57.68		
1yrzA	528	61.83	b.29.1.23,b.67.2.1	123948,123949
1a59A	378	62.28	a.103.1.1	18902
1k42A	168	63.10	b.18.1.14	72032
1rnbA	110	64.36	d.1.1.2	36196
1mgrA	99	66.58	d.1.1.2	79106
1is3A	135	67.23	b.29.1.3	76773
1xhnA	184	68.14	b.45.1.1	122007
1owcA	427	68.51	a.103.1.1	104039
1ng5A	215	70.98	b.100.1.1	91867
1qh5A	260	74.15	d.157.1.2	42057
1j1qA	261	74.30	d.165.1.1	90768
2exdA	80	75.59	b.40.12.1	132524
2octA	98	77.53		
1ea2A	131	78.33	d.17.4.3	64860
1m6eX	359	84.15	c.66.1.35	91188
1autL	114	84.42	g.3.11.1,g.3.11.1	44244,44245
1a2pA	110	85.12	d.1.1.2	36140
3maxA	367	87.07