# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2axhA	242	6.935	b.1.1.1,b.1.1.2	127490,127491
2vlmE	244	8.379	b.1.1.1,b.1.1.2	153293,153294
1rzuA	485	10.98	c.87.1.8	105140
3iuzA	340	17.24		
3f0yA	208	26.22		
1becA	238	27.89	b.1.1.1,b.1.1.2	20627,21561
3gsnB	243	28.87		
1tjxA	159	34.30	b.7.1.2	112465
2pyeE	242	37.64		
3e6eA	371	38.38		
1yrzA	528	38.66	b.29.1.23,b.67.2.1	123948,123949
1djxA	624	43.35	a.39.1.7,b.7.1.1,c.1.18.1	17342,23159,29587
1rcqA	357	44.97	b.49.2.2,c.1.6.1	104882,104883
2wgoA	98	47.82		
3e8lC	185	49.47		
2ztgA	739	50.82		
1xhnA	184	51.77	b.45.1.1	122007
2axjA	242	52.01		
2ofcA	142	53.60		
2tnfA	156	56.41	b.22.1.1	23880
1k42A	168	57.15	b.18.1.14	72032
1mgrA	99	57.57	d.1.1.2	79106
1iomA	377	61.68	a.103.1.1	83698
2jjwA	127	64.44		
1qasA	622	64.94	a.39.1.7,b.7.1.1,c.1.18.1	17340,23157,29585
1aj8A	371	65.35	a.103.1.1	18900
2exdA	80	66.42	b.40.12.1	132524
1kxgA	152	66.96	b.22.1.1	73145
2nw2B	243	67.89		
1ky3A	182	73.37	c.37.1.8	73193
2re9A	181	73.38		
3hurA	395	73.43		
1is3A	135	74.81	b.29.1.3	76773
1lckA	175	77.22	b.34.2.1,d.93.1.1	24552,40421
2nsqA	155	77.91		
1lf6A	684	78.47	a.102.1.5,b.30.5.5	77918,77919
1vfgA	390	83.38	a.173.1.1,d.218.1.4	108570,108571
1m6eX	359	85.10	c.66.1.35	91188
3c2uA	538	85.14		
1ea2A	131	87.29	d.17.4.3	64860
2b0rA	202	87.57