# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2axhA	242	7.576	b.1.1.1,b.1.1.2	127490,127491
2vlmE	244	8.555	b.1.1.1,b.1.1.2	153293,153294
1rzuA	485	17.05	c.87.1.8	105140
3iuzA	340	23.55		
1yrzA	528	24.26	b.29.1.23,b.67.2.1	123948,123949
1becA	238	31.47	b.1.1.1,b.1.1.2	20627,21561
2pyeE	242	32.00		
3gsnB	243	32.43		
3f0yA	208	32.62		
3e6eA	371	32.92		
1rcqA	357	36.97	b.49.2.2,c.1.6.1	104882,104883
3c2uA	538	39.87		
1tjxA	159	43.32	b.7.1.2	112465
2wgoA	98	45.14		
2nw2B	243	45.88		
1djxA	624	46.69	a.39.1.7,b.7.1.1,c.1.18.1	17342,23159,29587
1k42A	168	49.40	b.18.1.14	72032
2tnfA	156	49.47	b.22.1.1	23880
2axjA	242	52.78		
2nsqA	155	56.75		
1s55A	156	57.82	b.22.1.1	118865
2re9A	181	59.40		
2ofcA	142	61.79		
1qasA	622	61.83	a.39.1.7,b.7.1.1,c.1.18.1	17340,23157,29585
3hurA	395	65.95		
2exdA	80	67.06	b.40.12.1	132524
3e8lC	185	68.33		
2b0rA	202	70.59		
2ztgA	739	71.32		
3g1jA	93	71.52		
1lckA	175	71.59	b.34.2.1,d.93.1.1	24552,40421
2jjwA	127	72.54		
1iomA	377	75.01	a.103.1.1	83698
1kxgA	152	75.21	b.22.1.1	73145
1aj8A	371	76.85	a.103.1.1	18900
1xhnA	184	79.12	b.45.1.1	122007
4tsvA	150	79.27	b.22.1.1	23860
2jngA	105	79.52	b.34.9.4	148150
1rj8A	164	80.36	b.22.1.1	97547
1mgrA	99	82.81	d.1.1.2	79106
2r5oA	188	88.64		
1ky3A	182	88.74	c.37.1.8	73193
1kvkA	395	89.96	d.14.1.5,d.58.26.3	73060,73061