# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bkwA	243	2.618		
1v25A	541	2.820	e.23.1.1	108275
1iqaA	160	5.579	b.22.1.1	71274
1qhuA	460	5.984	b.66.1.1,b.66.1.1	27530,27531
3jzyA	510	6.629		
2chdA	142	8.512		
2axhA	242	8.512	b.1.1.1,b.1.1.2	127490,127491
1zz1A	369	10.44		
1qfhA	212	11.49	b.1.18.10,b.1.18.10	21893,21894
3jxsA	174	11.93		
3brdA	477	12.35	b.1.18.1,b.2.5.8,b.42.7.1	155505,155506,155507
3i5dA	356	15.05		
2vd8A	391	15.88		
3dd6A	255	16.57		
1rcqA	357	17.41	b.49.2.2,c.1.6.1	104882,104883
2fimA	276	17.81		
2nsqA	155	18.12		
3iuzA	340	18.40		
1becA	238	19.55	b.1.1.1,b.1.1.2	20627,21561
1xtmA	175	19.62		
3kudB	81	20.52		
3k1qC	1196	21.65		
3e5xA	250	21.74		
1fwyA	331	24.11	b.81.1.4,c.68.1.5	28064,34522
2aaa	484	29.78		
2qikA	285	30.26		
2o8nA	265	32.20		
1kvkA	395	32.75	d.14.1.5,d.58.26.3	73060,73061
2rcaA	292	32.85		
3kzfA	317	33.24		
1wkrA	340	33.50	b.50.1.2	109395
3cwcA	383	36.25		
1t5rA	284	36.37	f.6.1.1	106465
2qvpA	275	39.98		
1yuwA	554	42.33	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2wj5A	101	45.13		
1jmcA	246	45.75	b.40.4.3,b.40.4.3	25300,25301
3gwaA	365	46.23		
1pv5A	264	46.30	d.251.1.1	95150
3dqgA	151	49.79		
1cfb	205	50.47		
1k5wA	152	50.48	b.7.1.2	68212
3g39A	170	50.62		
2apxA	112	50.86		
1rj8A	164	50.87	b.22.1.1	97547
1xsjA	778	52.51	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1j1tA	233	54.00	b.29.1.18	90771
1s31A	273	55.10		
1oi0A	124	55.48	c.97.3.1	93045
3ei3A	1158	56.87		
1k42A	168	58.39	b.18.1.14	72032
2gu3A	136	59.36	d.17.1.6,d.17.1.6	147178,147179
2v8iA	543	59.39		
1agjA	242	61.98	b.47.1.1	25827
1t1iA	364	62.18	c.41.1.2	106248
1xksA	450	63.56	b.69.14.1	115422
3gs9A	342	63.74		
2ce7A	476	64.10	a.269.1.1,c.37.1.20	130312,130313
2edmA	161	64.21	b.170.1.1	146804
2prbA	196	65.11		
1sfnA	246	65.32	b.82.1.11	105496
2rfiA	285	66.10		
1eetA	557	66.15	c.55.3.1,e.8.1.2	33608,43078
1lckA	175	66.36	b.34.2.1,d.93.1.1	24552,40421
2q3xA	171	66.42		
1kxgA	152	66.65	b.22.1.1	73145
1mi4A	427	68.25	d.68.2.2	79141
3kciA	389	68.47		
2jllA	389	70.27		
2oa2A	148	70.58		
1fkoA	543	73.72	c.55.3.1,e.8.1.2	33612,43094
2jg9C	131	74.10	b.22.1.1	148047
2dg1A	333	75.06	b.68.6.1	131493
3dmaA	343	75.54		
1a8mA	157	76.89	b.22.1.1	23868
1qlgA	355	77.01	b.68.3.1	27627
2d3qA	442	77.75	d.58.4.14	131214
1xiyA	182	78.33	c.47.1.10	122022
1y0pA	571	79.05	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
3vubA	101	79.94	b.34.6.1	24613
1aym3	238	84.30		
1y1vS	179	84.63	i.8.1.1	116361
1nvvS	481	84.71	a.117.1.1	86279
3a3dA	453	84.83		
2octA	98	84.98		
3d7jA	152	88.59		
3gycA	393	88.70		
1t17A	148	88.84	d.129.3.6	112215
2wlzA	548	88.95		
3d1mC	102	89.36