# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2axhA	242	5.928	b.1.1.1,b.1.1.2	127490,127491
2vlmE	244	5.981	b.1.1.1,b.1.1.2	153293,153294
3iuzA	340	16.74		
1becA	238	22.33	b.1.1.1,b.1.1.2	20627,21561
1rzuA	485	24.54	c.87.1.8	105140
3gsnB	243	25.17		
3f0yA	208	29.18		
2nw2B	243	42.92		
1k42A	168	44.95	b.18.1.14	72032
2axjA	242	45.41		
2jjwA	127	46.42		
2pyeE	242	48.27		
2ztgA	739	50.36		
1iomA	377	52.20	a.103.1.1	83698
1yrzA	528	53.45	b.29.1.23,b.67.2.1	123948,123949
3c2uA	538	54.33		
1aj8A	371	54.35	a.103.1.1	18900
1autL	114	57.26	g.3.11.1,g.3.11.1	44244,44245
1djxA	624	59.61	a.39.1.7,b.7.1.1,c.1.18.1	17342,23159,29587
2tnfA	156	61.79	b.22.1.1	23880
1ky3A	182	62.28	c.37.1.8	73193
3e8lC	185	63.49		
2nsqA	155	64.14		
3e6eA	371	65.15		
1rlwA	126	65.46	b.7.1.1	23177
1rcqA	357	69.01	b.49.2.2,c.1.6.1	104882,104883
1qasA	622	69.69	a.39.1.7,b.7.1.1,c.1.18.1	17340,23157,29585
1rj8A	164	70.15	b.22.1.1	97547
2exdA	80	70.45	b.40.12.1	132524
2wgoA	98	70.69		
2arcA	164	77.37	b.82.4.1	28148
4tsvA	150	77.76	b.22.1.1	23860
3g39A	170	78.47		
1a59A	378	78.94	a.103.1.1	18902
3kcgI	432	80.59		
2octA	98	81.12		
1tjxA	159	81.70	b.7.1.2	112465
1owcA	427	84.89	a.103.1.1	104039
3maxA	367	85.82		
2gudA	122	85.95	b.77.3.1	135732
1lf6A	684	89.01	a.102.1.5,b.30.5.5	77918,77919
1kxgA	152	89.30	b.22.1.1	73145