# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rzuA	485	10.77	c.87.1.8	105140
3c2uA	538	16.88		
3iuzA	340	17.17		
1yrzA	528	21.43	b.29.1.23,b.67.2.1	123948,123949
2vlmE	244	22.52	b.1.1.1,b.1.1.2	153293,153294
2axhA	242	22.81	b.1.1.1,b.1.1.2	127490,127491
2arcA	164	24.04	b.82.4.1	28148
1k42A	168	35.37	b.18.1.14	72032
1iomA	377	37.26	a.103.1.1	83698
1aj8A	371	37.54	a.103.1.1	18900
3f0yA	208	41.31		
1autL	114	42.74	g.3.11.1,g.3.11.1	44244,44245
2wgoA	98	45.39		
2octA	98	49.42		
1owcA	427	51.59	a.103.1.1	104039
2tnfA	156	54.13	b.22.1.1	23880
1a59A	378	54.52	a.103.1.1	18902
3e8lC	185	55.30		
4tsvA	150	56.76	b.22.1.1	23860
1becA	238	56.80	b.1.1.1,b.1.1.2	20627,21561
1ky3A	182	57.18	c.37.1.8	73193
2vdrA	452	59.99		
3e6eA	371	61.70		
2re9A	181	64.92		
1s55A	156	65.21	b.22.1.1	118865
2b0rA	202	65.34		
3d2qA	70	68.08		
2rdkA	109	70.21		
1tjxA	159	71.27	b.7.1.2	112465
2jjwA	127	73.95		
2nw2B	243	78.27		
1rcqA	357	84.24	b.49.2.2,c.1.6.1	104882,104883
1alyA	146	84.87	b.22.1.1	23856
3gsnB	243	86.20		
3maxA	367	87.55		
2nsqA	155	88.11		
2ibpA	409	89.96