# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xfcA	384	13.77		
2wgoA	98	22.39		
1kvkA	395	23.45	d.14.1.5,d.58.26.3	73060,73061
1bdyA	123	24.03	b.7.1.1	23190
2oziA	98	24.45		
7odcA	424	25.19	b.49.2.3,c.1.6.1	26488,28650
1lnsA	763	26.05	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
1vkdA	338	28.10	b.67.2.4	108644
3f6gA	127	28.79		
1vfsA	386	30.87	b.49.2.2,c.1.6.1	108584,108585
2gu3A	136	31.29	d.17.1.6,d.17.1.6	147178,147179
3lh9A	340	31.38		
3fsaA	125	33.26		
3a57A	165	34.56		
3jxsA	174	35.18		
2qjvA	270	39.02		
1mgrA	99	40.91	d.1.1.2	79106
3dnuA	440	43.32		
2p2wA	367	48.64		
3fdwA	148	49.73		
1f1uA	323	49.78	d.32.1.3,d.32.1.3	83200,83201
1k4zA	159	52.13	b.80.5.1	72070
1lniA	96	53.84	d.1.1.2	74046
1xfsA	178	55.07	d.129.3.5	109589
3k85A	357	56.35		
3imaB	91	57.21		
1stfI	98	58.00	d.17.1.2	38006
2wiuA	446	60.81		
1zsqA	528	61.44	b.55.1.8,c.45.1.3	125616,125617
2hrvA	142	61.51	b.47.1.4	26429
3fgbA	361	62.36		
1aj8A	371	62.96	a.103.1.1	18900
1a59A	378	63.60	a.103.1.1	18902
1y13A	181	65.27	d.96.1.2	116319
3dlmA	213	65.41		
2rdkA	109	65.98		
2e4tA	519	66.17		
1we3O	100	66.65	b.35.1.1	109330
1n26A	325	67.19	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1fguA	252	67.45	b.40.4.3,b.40.4.3	25296,25297
1grjA	158	67.51	a.2.1.1,d.26.1.2	15691,38433
2ifcA	385	67.68		
1vgmA	378	68.05		
2ov0A	105	68.16	b.6.1.1	149033
2nqtA	352	70.56		
1iomA	377	70.68	a.103.1.1	83698
2d1sA	548	71.80		
3hwkA	414	73.40		
3kwuA	150	75.90		
3hn8A	296	76.31		
3db3A	161	78.57		
2jc7A	244	79.12		
3lk42	277	79.63		
2w9qA	87	81.37		
3bf2A	152	82.65		
1a2pA	110	83.88	d.1.1.2	36140
3h0lB	478	84.81		
2b0rA	202	85.50		
2ibpA	409	86.58		
1e8oB	106	86.66	d.49.1.1	38775
1rlw	126	88.95