# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qjvA 270 4.673 2oziA 98 12.25 1grjA 158 14.75 a.2.1.1,d.26.1.2 15691,38433 3fsaA 125 14.93 1j58A 385 15.38 b.82.1.2 71531 2p2wA 367 15.51 1mgrA 99 15.71 d.1.1.2 79106 1a59A 378 16.92 a.103.1.1 18902 1vaxA 287 17.11 d.96.1.4,d.96.1.4 119910,119911 1k4zA 159 17.55 b.80.5.1 72070 1vgmA 378 17.98 2ifcA 385 18.80 2yxmA 100 19.61 1xfcA 384 19.67 1aj8A 371 20.56 a.103.1.1 18900 2e6jA 112 20.75 1iomA 377 21.27 a.103.1.1 83698 1jzgA 128 21.53 b.6.1.1 67855 1xsqA 168 21.78 b.82.1.14 115999 1lnsA 763 22.03 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2wgoA 98 22.66 2bdrA 175 23.90 b.82.1.14 128342 4tsvA 150 24.39 b.22.1.1 23860 1lniA 96 25.14 d.1.1.2 74046 1zejA 293 26.28 3hwkA 414 26.59 1vfsA 386 26.96 b.49.2.2,c.1.6.1 108584,108585 1kvkA 395 27.61 d.14.1.5,d.58.26.3 73060,73061 1grj 158 28.07 3imaB 91 29.36 3a57A 165 30.36 3co8A 380 30.49 2k5wA 117 30.83 b.40.13.1 148275 1svb 395 31.30 1e8oB 106 31.98 d.49.1.1 38775 3jxsA 174 32.44 2d1sA 548 32.69 3f7qA 234 33.00 3dlmA 213 33.48 2bycA 137 33.53 d.58.10.2 129476 3ft0A 129 35.39 1mpxA 615 35.88 b.18.1.13,c.69.1.21 85041,85042 3fgbA 361 36.02 2b0rA 202 36.05 2ww2A 737 38.00 1bd0A 388 38.60 b.49.2.2,c.1.6.1 26480,28642 3ef4A 124 38.75 1nwpA 128 39.37 b.6.1.1 23011 1rqwA 207 39.67 b.25.1.1 97781 2pe4A 424 40.04 3bmbA 136 41.96 1kcwA 1046 42.23 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2ibpA 409 42.86 2k5qA 105 43.73 b.40.13.1 148274 1qr4A 186 43.98 b.1.2.1,b.1.2.1 21986,21987 1f5jA 199 43.98 b.29.1.11 24342 2bllA 345 45.21 c.2.1.2 128733 2psbA 320 45.56 c.153.1.1 149819 3bf2A 152 46.60 1genA 218 47.06 b.66.1.1 27536 1umhA 184 47.71 b.18.1.21 99605 2pltA 98 47.74 b.6.1.1 22862 2e4tA 519 47.76 3f7pC 248 48.13 1svbA 395 49.16 b.1.18.4,f.10.1.1 21814,43827 3iuzA 340 49.20 3c5xA 402 49.86 1eeuA 114 50.98 b.1.1.1 20546 3fdwA 148 51.02 1xe1A 116 52.66 b.43.3.1 109571 1gy8A 397 52.94 c.2.1.2 83376 3lh9A 340 53.41 2azeB 106 54.64 e.63.1.2 127606 2v3iA 434 54.91 b.29.1.10 152458 1f1uA 323 55.00 d.32.1.3,d.32.1.3 83200,83201 2nn4A 72 55.71 a.272.1.1 148291 3e53A 480 55.72 1xynA 178 56.45 b.29.1.11 24322 1vkdA 338 57.05 b.67.2.4 108644 1ek6A 348 57.84 c.2.1.2 29800 1bdyA 123 61.46 b.7.1.1 23190 1fguA 252 61.75 b.40.4.3,b.40.4.3 25296,25297 1jcfA 344 61.88 c.55.1.1,c.55.1.1 62878,62879 3dnuA 440 62.85 2jc7A 244 63.34 3k85A 357 63.61 1wuuA 399 64.50 d.14.1.5,d.58.26.7 114900,114901 2rdkA 109 64.54 2pmaA 146 65.35 b.50.1.3 149657 1iz6A 138 66.48 b.34.5.2,b.40.4.5 76976,76977 1owcA 427 66.91 a.103.1.1 104039 2q8oA 136 67.20 b.22.1.1 150129 3fceA 512 68.42 2rkyA 93 69.34 g.27.1.1,g.27.1.1 152112,152113 3g7sA 549 69.83 1rcqA 357 71.35 b.49.2.2,c.1.6.1 104882,104883 2qnkA 286 71.51 1waaA 93 71.54 3ip4B 483 71.65 3f6gA 127 71.90 2h12A 436 71.96 2f23A 156 72.39 a.2.1.1,d.26.1.2 132797,132798 3dhvA 512 73.17 3aagA 291 73.58 1a2pA 110 74.92 d.1.1.2 36140 1wp5A 323 75.61 b.68.10.1 114780 3l9jT 149 75.86 1h4gA 207 76.12 b.29.1.11 70863 2in0A 139 76.35 1n26A 325 76.46 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1r4uA 301 77.88 d.96.1.4,d.96.1.4 97047,97048 3fc0A 139 78.08 3ezwA 526 78.77 2re3A 194 80.27 3kstA 306 80.75 2hrvA 142 81.07 b.47.1.4 26429 7odcA 424 81.98 b.49.2.3,c.1.6.1 26488,28650 1i6vC 1118 83.22 e.29.1.1 61856 1o4tA 133 83.23 b.82.1.9 86622 1amuA 563 86.40 e.23.1.1 43351 2octA 98 86.82 1bkbA 136 87.15 b.34.5.2,b.40.4.5 24609,25341 2qflA 267 87.97 3b5lB 198 89.05