# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qjvA	270	8.398		
1mgrA	99	12.35	d.1.1.2	79106
1kvkA	395	16.91	d.14.1.5,d.58.26.3	73060,73061
1lniA	96	18.05	d.1.1.2	74046
1bdyA	123	18.91	b.7.1.1	23190
2oziA	98	20.90		
1a2pA	110	21.80	d.1.1.2	36140
7odcA	424	23.05	b.49.2.3,c.1.6.1	26488,28650
3fsaA	125	24.74		
3k85A	357	27.41		
1gouA	116	29.50	d.1.1.2	65429
2nqtA	352	36.29		
1dcuA	357	37.73	e.7.1.1	42943
1xfcA	384	40.15		
1k4zA	159	40.69	b.80.5.1	72070
2in0A	139	44.51		
4tsvA	150	46.18	b.22.1.1	23860
1jzgA	128	46.51	b.6.1.1	67855
3fdwA	148	47.20		
1grjA	158	47.51	a.2.1.1,d.26.1.2	15691,38433
1zejA	293	49.00		
2p2wA	367	51.44		
2e6jA	112	51.63		
3hwkA	414	54.41		
1f1uA	323	56.24	d.32.1.3,d.32.1.3	83200,83201
3jxsA	174	56.34		
2hrvA	142	57.02	b.47.1.4	26429
1no7A	604	58.66	e.48.1.1	92016
2ifcA	385	59.44		
3imaB	91	61.15		
3eo6A	106	61.48		
3dlmA	213	62.75		
2jc7A	244	65.35		
1vgmA	378	66.85		
3hn8A	296	67.18		
1rsyA	152	69.63	b.7.1.2	23192
2bllA	345	70.66	c.2.1.2	128733
2b0rA	202	71.17		
2gudA	122	71.87	b.77.3.1	135732
1aj8A	371	71.97	a.103.1.1	18900
1a59A	378	72.71	a.103.1.1	18902
2e4tA	519	73.44		
3lh9A	340	73.77		
3f6gA	127	74.01		
1xfsA	178	74.03	d.129.3.5	109589
2oi2A	292	76.46		
2wgoA	98	76.46		
1iomA	377	78.34	a.103.1.1	83698
3dnuA	440	79.80		
1vfsA	386	80.70	b.49.2.2,c.1.6.1	108584,108585
1nwpA	128	81.22	b.6.1.1	23011
1n26A	325	81.76	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1we3O	100	82.49	b.35.1.1	109330
3a57A	165	82.83		
1ig9A	903	84.55	c.55.3.5,e.8.1.1	62367,62368
2ztgA	739	84.62		
3lk42	277	88.83		
2uzpA	144	89.81