# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qjvA	270	10.55		
1mgrA	99	10.58	d.1.1.2	79106
1kvkA	395	14.69	d.14.1.5,d.58.26.3	73060,73061
1lniA	96	17.64	d.1.1.2	74046
1a2pA	110	23.22	d.1.1.2	36140
3f6gA	127	23.76		
1gouA	116	25.98	d.1.1.2	65429
3hwkA	414	27.94		
7odcA	424	32.01	b.49.2.3,c.1.6.1	26488,28650
3imaB	91	32.62		
2p2wA	367	34.20		
3fdwA	148	37.72		
1iomA	377	37.92	a.103.1.1	83698
2gudA	122	37.92	b.77.3.1	135732
1vgmA	378	39.07		
2nqtA	352	39.09		
1a59A	378	39.81	a.103.1.1	18902
2ifcA	385	41.64		
3fsaA	125	42.52		
1k4zA	159	45.74	b.80.5.1	72070
2hrvA	142	47.00	b.47.1.4	26429
1aj8A	371	47.17	a.103.1.1	18900
3eo6A	106	49.51		
1bdyA	123	50.79	b.7.1.1	23190
1dcuA	357	51.80	e.7.1.1	42943
2bllA	345	51.82	c.2.1.2	128733
1f1uA	323	53.41	d.32.1.3,d.32.1.3	83200,83201
3f7qA	234	55.31		
1ig9A	903	55.63	c.55.3.5,e.8.1.1	62367,62368
3hn8A	296	57.00		
3lh9A	340	62.19		
3dlmA	213	62.68		
1grjA	158	62.85	a.2.1.1,d.26.1.2	15691,38433
4tsvA	150	63.54	b.22.1.1	23860
3k85A	357	64.04		
3f7pC	248	64.59		
3a57A	165	64.98		
3c5xA	402	65.60		
2wgoA	98	66.70		
3gaxA	120	67.12		
2oziA	98	68.51		
1xfsA	178	73.97	d.129.3.5	109589
3db3A	161	74.29		
1n26A	325	74.47	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2in0A	139	74.90		
3bf2A	152	74.94		
1xfcA	384	75.03		
3jxsA	174	78.59		
1pylA	97	80.35	d.1.1.2	104391
2ibpA	409	80.81		
1vfsA	386	81.42	b.49.2.2,c.1.6.1	108584,108585
2e4tA	519	83.57		
3kwuA	150	84.82		
3dnuA	440	85.83		
1rsyA	152	87.16	b.7.1.2	23192
1lnsA	763	87.83	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
2oqkA	117	88.00		
1stfI	98	88.01	d.17.1.2	38006
2rdkA	109	88.86