# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3f1zA 133 1.444 1b9mA 265 2.603 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1gutA 68 4.195 b.40.6.1 65576 1bkbA 136 4.850 b.34.5.2,b.40.4.5 24609,25341 2fhdA 153 5.017 2oq0A 206 5.375 b.40.16.1,b.40.16.1 148970,148971 1fr3A 67 6.784 b.40.6.1 25436 2i45A 107 6.915 1fguA 252 9.428 b.40.4.3,b.40.4.3 25296,25297 1h9mA 145 10.26 b.40.6.2,b.40.6.2 60833,60834 2uubL 135 11.45 b.40.4.5 139943 3e0eA 97 12.21 1gy6A 127 13.31 d.17.4.2 70736 1ybyA 215 14.10 1o7iA 119 14.49 b.40.4.3 86642 3dm3A 105 15.66 3i4oA 79 17.98 1jmcA 246 20.15 b.40.4.3,b.40.4.3 25300,25301 1bkb 136 22.07 3d26A 301 22.56 3gbmA 334 24.12 2pbeA 294 24.69 a.160.1.5,d.218.1.13 149355,149356 1fjgL 135 24.90 b.40.4.5 25346 1iz6A 138 25.32 b.34.5.2,b.40.4.5 76976,76977 3db3A 161 26.77 2zl7A 295 28.21 3bmbA 136 29.78 1vbvA 105 30.85 b.34.17.1 119965 2cqaA 95 34.88 b.40.4.14 130716 2f23A 156 36.80 a.2.1.1,d.26.1.2 132797,132798 2q4zA 312 37.13 1rcqA 357 37.94 b.49.2.2,c.1.6.1 104882,104883 2ebdA 309 37.96 2w68A 195 41.86 3co8A 380 42.17 1vfsA 386 43.47 b.49.2.2,c.1.6.1 108584,108585 2vd8A 391 43.62 3knhL 132 44.94 3bf2A 152 46.26 1mppA 361 46.62 b.50.1.2 26856 1z47A 355 48.04 1jsdA 319 50.60 b.19.1.2 63258 3h6mA 143 51.07 2hdvA 111 52.45 2j8bA 79 52.73 g.7.1.3 147908 1l1qA 186 52.93 c.61.1.1 77653 2egeA 75 54.64 1e2wA 251 55.16 b.2.6.1,b.84.2.2 22466,28252 2vknA 70 55.70 2f9hA 129 55.83 b.161.1.1 133162 2j6fA 62 55.92 3bjuA 521 56.33 2v05A 311 57.60 2qazA 128 59.73 2khsA 121 60.31 2je6I 251 60.48 b.40.4.5,b.84.4.2,d.51.1.1 147995,147996,147997 3bnkA 196 61.10 1gybA 125 61.25 d.17.4.2 70744 1g291 372 61.46 2rcfA 91 61.85 b.40.15.1 151885 1jsmA 325 62.30 b.19.1.2 63264 2pn0A 141 62.91 3c7xA 196 63.33 2v33A 91 64.48 b.1.18.4 152439 2r0hA 164 66.83 1d2eA 397 67.13 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2z30B 65 67.24 3cf6E 694 67.30 2vqeL 135 68.11 i.1.1.1 153436 2v24A 208 69.46 1u3oA 82 69.83 1gcqC 70 71.75 b.34.2.1 60436 3gbnA 331 72.00 2d1xA 66 72.12 2ov0A 105 72.91 b.6.1.1 149033 3d82A 102 73.72 2k75A 106 74.38 2qasA 157 74.48 2kcaA 109 74.68 1igqA 62 76.23 b.34.1.3 66130 1ehxA 94 76.94 b.1.18.13 21950 2wxuA 370 77.59 1zh8A 340 77.87 c.2.1.3,d.81.1.5 125077,125078 1rv0H 328 79.14 b.19.1.2 97895 2ok8A 316 80.52 2g0qA 173 81.07 3h43A 85 81.31 1fdr 248 82.23 1h6hA 143 82.53 d.189.1.1 65681 1k3bA 119 82.58 b.61.5.1 72016 3h15A 198 82.70 1fl0A 171 83.09 b.40.4.4 25315 2p2sA 336 84.16 2hdaA 64 85.60 1rvtH 328 86.14 b.19.1.2 97931 1q7fA 286 86.90 b.68.9.1 96036 2h5xA 196 88.19 2woyA 356 89.22 1grjA 158 89.78 a.2.1.1,d.26.1.2 15691,38433