# List of top-scoring protein chains for T0564.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3k62A 412 21.30 1aihA 170 39.21 d.163.1.1 42149 2pw9A 268 55.00 c.97.1.5 149896 3jwjA 202 62.62 3jwhA 217 65.52 2jysA 107 65.65 2fblA 153 67.19 d.63.1.2 133249 1xz0A 279 70.26 b.1.1.2,d.19.1.1 122461,122462 1onqA 283 72.76 b.1.1.2,d.19.1.1 93365,93366 1z4eA 153 78.01 d.108.1.1 124431 1jn1A 158 87.31 d.79.5.1 71754