# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qjvA	270	8.380		
2gysA	419	12.03	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1n26A	325	15.72	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
3k85A	357	17.72		
3jxsA	174	20.64		
2wgoA	98	23.72		
1a4aA	129	26.88	b.6.1.1	22907
3f0nA	414	33.71		
2octA	98	34.96		
2pn0A	141	35.73		
1grjA	158	35.95	a.2.1.1,d.26.1.2	15691,38433
1yrkA	126	36.10		
1dceA	567	37.18	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
3imaB	91	37.40		
2ibpA	409	38.02		
3cjlA	88	38.77		
3f6gA	127	39.11		
2ifcA	385	39.96		
1stfI	98	40.25	d.17.1.2	38006
1ogaD	215	41.41	b.1.1.1,b.1.1.2	86990,86991
1wuuA	399	43.04	d.14.1.5,d.58.26.7	114900,114901
2p2wA	367	43.09		
1fguA	252	44.91	b.40.4.3,b.40.4.3	25296,25297
1b77A	228	45.58	d.131.1.2,d.131.1.2	41362,41363
2a2cA	478	45.82		
1a59A	378	46.71	a.103.1.1	18902
1f1xA	322	49.10	d.32.1.3,d.32.1.3	83208,83209
1tjxA	159	53.24	b.7.1.2	112465
1vfsA	386	54.61	b.49.2.2,c.1.6.1	108584,108585
2ccwA	129	55.15	b.6.1.1	130259
1vgmA	378	55.16		
1rlw	126	55.95		
3g7sA	549	57.12		
2gu3A	136	57.29	d.17.1.6,d.17.1.6	147178,147179
2pmaA	146	58.13	b.50.1.3	149657
3c5xA	402	58.65		
2uzpA	144	58.94		
1aj8A	371	59.54	a.103.1.1	18900
2jysA	107	63.23		
1iarB	207	63.98	b.1.2.1,b.1.2.1	22037,22038
1loxA	662	64.45	a.119.1.2,b.12.1.1	19238,23638
1iomA	377	64.94	a.103.1.1	83698
3b8bA	292	65.42		
3hn8A	296	65.58		
3fdwA	148	65.94		
1ukfA	188	68.40	d.3.1.10	99488
3hupA	130	74.16		
1mkaA	171	74.45	d.38.1.2	38543
1mgrA	99	76.31	d.1.1.2	79106
2rdkA	109	76.42		
2tnfA	156	76.59	b.22.1.1	23880
2f23A	156	77.30	a.2.1.1,d.26.1.2	132797,132798
2ibxA	340	77.48	b.19.1.2	137209
3dlmA	213	77.56		
3gm8A	801	77.82		
1rsy	152	78.89		
3fcgA	90	80.49		
3iuzA	340	83.85		
3iesA	551	84.97		
2f4iA	197	85.15	b.40.11.1	132923
2k5qA	105	86.50	b.40.13.1	148274
3a57A	165	87.16		
2dvyA	226	87.20		
1e8oB	106	87.22	d.49.1.1	38775
2ckkA	127	87.95		
1we3O	100	89.73	b.35.1.1	109330