# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1n26A	325	9.697	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1xsjA	778	16.25	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1dceA	567	16.38	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
3f0nA	414	17.63		
1grjA	158	19.76	a.2.1.1,d.26.1.2	15691,38433
1a4aA	129	21.23	b.6.1.1	22907
2qjvA	270	21.60		
3k85A	357	21.95		
2gysA	419	25.65	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
3dlmA	213	27.41		
1k4zA	159	27.72	b.80.5.1	72070
2ibpA	409	31.31		
2pn0A	141	31.75		
1rlw	126	37.34		
1ogaD	215	37.66	b.1.1.1,b.1.1.2	86990,86991
1f0yA	302	39.13	a.100.1.3,c.2.1.6	18793,30197
2wgoA	98	39.72		
1mgrA	99	41.62	d.1.1.2	79106
2gu3A	136	42.94	d.17.1.6,d.17.1.6	147178,147179
2ifcA	385	46.56		
2p2wA	367	46.62		
2gudA	122	48.74	b.77.3.1	135732
2pmaA	146	50.79	b.50.1.3	149657
1a59A	378	52.03	a.103.1.1	18902
1j32A	388	59.73	c.67.1.1	77067
2f4iA	197	60.90	b.40.11.1	132923
1iowA	306	62.05	c.30.1.2,d.142.1.1	31713,41481
1qr4A	186	63.30	b.1.2.1,b.1.2.1	21986,21987
3fdwA	148	63.72		
2octA	98	63.76		
2qlcA	126	64.97		
3kzfA	317	65.02		
3f04A	143	66.37		
3hn8A	296	66.80		
2rdkA	109	67.85		
1wuuA	399	68.02	d.14.1.5,d.58.26.7	114900,114901
1cipA	353	68.74	a.66.1.1,c.37.1.8	18210,32093
1tjxA	159	69.73	b.7.1.2	112465
1lniA	96	70.60	d.1.1.2	74046
1rsyA	152	70.85	b.7.1.2	23192
1ar71	302	70.96		
1ar61	302	72.73		
1vgmA	378	73.40		
2f23A	156	73.43	a.2.1.1,d.26.1.2	132797,132798
3iuzA	340	73.72		
1al21	302	73.94		
1aj8A	371	74.48	a.103.1.1	18900
2b0rA	202	78.81		
2cm4A	150	78.83		
2ibxA	340	78.89	b.19.1.2	137209
1tadA	324	79.32	a.66.1.1,c.37.1.8	18194,32077
1stfI	98	80.31	d.17.1.2	38006
1no7A	604	81.62	e.48.1.1	92016
3dwvA	187	82.16		
1iomA	377	83.01	a.103.1.1	83698
2ccwA	129	85.73	b.6.1.1	130259
1rgeA	96	86.94	d.1.1.2	36028
1b77A	228	87.81	d.131.1.2,d.131.1.2	41362,41363
3imaB	91	89.24