# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3f0nA	414	8.246		
3k85A	357	10.75		
1xsjA	778	10.98	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1a4aA	129	14.36	b.6.1.1	22907
1n26A	325	14.68	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2qjvA	270	17.64		
1dceA	567	19.35	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
2gysA	419	23.37	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1rlw	126	27.45		
3dlmA	213	27.62		
1k4zA	159	28.56	b.80.5.1	72070
1ogaD	215	33.39	b.1.1.1,b.1.1.2	86990,86991
1mgrA	99	35.62	d.1.1.2	79106
2ibpA	409	36.62		
3f04A	143	39.86		
2ccwA	129	41.81	b.6.1.1	130259
1grjA	158	42.04	a.2.1.1,d.26.1.2	15691,38433
1rsyA	152	42.38	b.7.1.2	23192
3fdwA	148	43.69		
3hn8A	296	43.80		
2gudA	122	47.08	b.77.3.1	135732
1iowA	306	48.01	c.30.1.2,d.142.1.1	31713,41481
3jxsA	174	49.87		
2ifcA	385	50.12		
1ar61	302	51.14		
1ar71	302	51.14		
2opeA	128	51.26		
1al21	302	51.49		
2p2wA	367	52.66		
2f4iA	197	54.14	b.40.11.1	132923
1wuuA	399	55.66	d.14.1.5,d.58.26.7	114900,114901
1b77A	228	55.76	d.131.1.2,d.131.1.2	41362,41363
2uzpA	144	57.51		
1tjxA	159	61.42	b.7.1.2	112465
2wgoA	98	61.78		
3idaA	587	62.08		
1a59A	378	63.55	a.103.1.1	18902
1f0yA	302	63.64	a.100.1.3,c.2.1.6	18793,30197
1lniA	96	65.07	d.1.1.2	74046
3kzfA	317	67.34		
3f6gA	127	68.62		
3fbkA	153	70.62		
1t5hX	504	72.32	e.23.1.1	106449
2cm5A	166	72.42	b.7.1.2	130613
1we3O	100	73.52	b.35.1.1	109330
2pn0A	141	73.68		
3fsaA	125	73.89		
1fguA	252	74.33	b.40.4.3,b.40.4.3	25296,25297
3a57A	165	75.36		
2gu3A	136	80.25	d.17.1.6,d.17.1.6	147178,147179
1rgeA	96	81.01	d.1.1.2	36028
1f1xA	322	83.20	d.32.1.3,d.32.1.3	83208,83209
1j32A	388	85.30	c.67.1.1	77067
1aj8A	371	85.35	a.103.1.1	18900
3hhuA	224	89.33