# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xsjA	778	13.20	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1n26A	325	14.13	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2gysA	419	21.42	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2qjvA	270	21.42		
3k85A	357	26.25		
1k4zA	159	27.18	b.80.5.1	72070
1mgrA	99	27.81	d.1.1.2	79106
2ibpA	409	27.85		
1ogaD	215	28.46	b.1.1.1,b.1.1.2	86990,86991
1a59A	378	31.70	a.103.1.1	18902
2ifcA	385	33.16		
1grjA	158	34.20	a.2.1.1,d.26.1.2	15691,38433
3f6gA	127	34.31		
2p2wA	367	35.02		
1a4aA	129	39.94	b.6.1.1	22907
2wgoA	98	41.18		
1vgmA	378	41.82		
2pn0A	141	45.48		
1rgeA	96	47.05	d.1.1.2	36028
2gudA	122	50.48	b.77.3.1	135732
1iomA	377	53.04	a.103.1.1	83698
1aj8A	371	53.08	a.103.1.1	18900
3imaB	91	54.97		
1lniA	96	58.30	d.1.1.2	74046
2oqkA	117	59.11		
2pmaA	146	60.36	b.50.1.3	149657
1rlw	126	62.85		
1qr4A	186	63.62	b.1.2.1,b.1.2.1	21986,21987
1dceA	567	64.55	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
1wuuA	399	64.65	d.14.1.5,d.58.26.7	114900,114901
3fdwA	148	66.39		
3c5xA	402	69.17		
1t5hX	504	70.14	e.23.1.1	106449
2rdkA	109	71.27		
2wp3T	102	71.96		
1f0yA	302	72.18	a.100.1.3,c.2.1.6	18793,30197
1stfI	98	72.67	d.17.1.2	38006
3dlmA	213	73.08		
1ar71	302	73.77		
3a57A	165	75.21		
1ar61	302	75.60		
1al21	302	75.91		
2b7uA	257	76.78		
3i4zA	465	77.47		
3iuzA	340	77.74		
3hhuA	224	79.46		
3hwkA	414	79.95		
1hpcA	131	82.10	b.84.1.1	28221
3f04A	143	83.93		
2octA	98	86.50		
1gouA	116	87.46	d.1.1.2	65429