# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gysA	419	12.46	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2qjvA	270	13.07		
1n26A	325	15.20	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1ogaD	215	18.83	b.1.1.1,b.1.1.2	86990,86991
3k85A	357	21.40		
3f6gA	127	24.11		
1mgrA	99	24.23	d.1.1.2	79106
2ibpA	409	25.90		
1k4zA	159	28.89	b.80.5.1	72070
1xsjA	778	29.34	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2gudA	122	34.30	b.77.3.1	135732
3dlmA	213	35.45		
2ifcA	385	36.40		
2p2wA	367	38.57		
1dceA	567	41.24	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
1a59A	378	41.52	a.103.1.1	18902
1vgmA	378	45.28		
3f0nA	414	49.26		
3c5xA	402	49.53		
3fdwA	148	51.53		
1a4aA	129	52.70	b.6.1.1	22907
3g7sA	549	53.33		
1t5hX	504	54.01	e.23.1.1	106449
1rgeA	96	55.48	d.1.1.2	36028
1pk6B	132	55.82	b.22.1.1	94802
1grjA	158	56.08	a.2.1.1,d.26.1.2	15691,38433
1rlw	126	57.92		
1iomA	377	58.58	a.103.1.1	83698
1lniA	96	60.11	d.1.1.2	74046
1aj8A	371	60.80	a.103.1.1	18900
3imaB	91	64.60		
2wgoA	98	64.95		
1f1xA	322	65.34	d.32.1.3,d.32.1.3	83208,83209
2wp3T	102	66.37		
3jxsA	174	67.39		
3f04A	143	73.02		
1k8tA	510	75.60	e.41.1.1	68316
1wuuA	399	75.94	d.14.1.5,d.58.26.7	114900,114901
2pn0A	141	77.22		
3iesA	551	77.95		
1al21	302	82.71		
1vfsA	386	83.08	b.49.2.2,c.1.6.1	108584,108585
2wakA	167	83.24		
3hn8A	296	83.86		
2oqkA	117	84.21		
1ar61	302	84.89		
3a57A	165	85.21		
2iwkA	642	88.47		
1tjxA	159	88.95	b.7.1.2	112465
1ar71	302	89.14		
2uzpA	144	89.27