# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1n26A	325	9.771	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
3f0nA	414	11.37		
2qjvA	270	11.53		
3k85A	357	16.56		
2gysA	419	18.63	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1dceA	567	19.29	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
1a4aA	129	21.93	b.6.1.1	22907
1xsjA	778	22.04	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2ibpA	409	25.02		
1rlw	126	26.26		
1ogaD	215	29.48	b.1.1.1,b.1.1.2	86990,86991
2ifcA	385	33.97		
2opeA	128	34.48		
3f6gA	127	34.90		
2p2wA	367	37.34		
1mgrA	99	38.87	d.1.1.2	79106
1grjA	158	42.51	a.2.1.1,d.26.1.2	15691,38433
1a59A	378	43.18	a.103.1.1	18902
3dwvA	187	45.21		
3hn8A	296	50.28		
3dlmA	213	50.86		
2ibxA	340	51.94	b.19.1.2	137209
2pn0A	141	54.34		
1vgmA	378	56.67		
1b77A	228	58.43	d.131.1.2,d.131.1.2	41362,41363
1f0yA	302	58.51	a.100.1.3,c.2.1.6	18793,30197
2jbhA	225	58.63		
2ielA	138	59.01	c.26.2.4	147649
2wgoA	98	61.45		
3hhuA	224	62.87		
1rgeA	96	66.54	d.1.1.2	36028
2tnfA	156	69.62	b.22.1.1	23880
1aj8A	371	69.64	a.103.1.1	18900
1lniA	96	71.08	d.1.1.2	74046
3b8bA	292	71.44		
3fdwA	148	78.41		
1wuuA	399	78.46	d.14.1.5,d.58.26.7	114900,114901
3a57A	165	78.93		
3f04A	143	79.22		
1iomA	377	80.06	a.103.1.1	83698
1we3O	100	80.97	b.35.1.1	109330
3lm5A	327	81.29		
2ccwA	129	81.50	b.6.1.1	130259
2wakA	167	81.51		
3imaB	91	82.60		
3idaA	587	83.44		
1tjxA	159	83.81	b.7.1.2	112465
1rlwA	126	87.38	b.7.1.1	23177
2jysA	107	88.41		
3b7yA	153	88.43		
1iarB	207	88.76	b.1.2.1,b.1.2.1	22037,22038
3hwkA	414	89.62