# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qjvA	270	8.298		
1n26A	325	14.27	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2gysA	419	17.06	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
3f0nA	414	18.41		
1xsjA	778	19.60	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1a4aA	129	22.61	b.6.1.1	22907
3k85A	357	26.03		
1grjA	158	26.74	a.2.1.1,d.26.1.2	15691,38433
2ibpA	409	27.19		
1a59A	378	27.50	a.103.1.1	18902
2ifcA	385	33.51		
1rlw	126	34.31		
1ogaD	215	35.28	b.1.1.1,b.1.1.2	86990,86991
1dceA	567	36.98	a.118.6.1,b.7.4.1,c.10.2.2	19191,23218,30867
1k4zA	159	38.30	b.80.5.1	72070
2p2wA	367	39.40		
3dlmA	213	39.69		
1vgmA	378	45.67		
2pn0A	141	48.50		
1b77A	228	48.60	d.131.1.2,d.131.1.2	41362,41363
2opeA	128	48.80		
1tjxA	159	48.92	b.7.1.2	112465
3f6gA	127	49.36		
2octA	98	50.69		
3hn8A	296	51.90		
2wgoA	98	56.14		
1y13A	181	56.17	d.96.1.2	116319
1f0yA	302	59.75	a.100.1.3,c.2.1.6	18793,30197
1iarB	207	61.84	b.1.2.1,b.1.2.1	22037,22038
1qhqA	140	62.16	b.6.1.1	63326
1mgrA	99	62.19	d.1.1.2	79106
3a57A	165	62.79		
3kzfA	317	63.36		
3hhuA	224	63.82		
2gudA	122	66.21	b.77.3.1	135732
1stfI	98	69.35	d.17.1.2	38006
2e6jA	112	70.76		
3imaB	91	71.17		
1fguA	252	72.89	b.40.4.3,b.40.4.3	25296,25297
1rsyA	152	74.50	b.7.1.2	23192
1k8tA	510	77.41	e.41.1.1	68316
2ccwA	129	77.61	b.6.1.1	130259
1wuuA	399	77.75	d.14.1.5,d.58.26.7	114900,114901
3fdwA	148	77.94		
3f04A	143	78.57		
2pmaA	146	79.02	b.50.1.3	149657
3fsaA	125	79.44		
1aj8A	371	80.99	a.103.1.1	18900
1lniA	96	83.44	d.1.1.2	74046
1iomA	377	83.81	a.103.1.1	83698
3e0gA	483	84.77		
3fhrA	336	86.70		
1rgeA	96	87.34	d.1.1.2	36028
2re3A	194	87.41		
1we3O	100	87.55	b.35.1.1	109330
2uzpA	144	88.04