# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ielA	138	22.35	c.26.2.4	147649
1vajA	214	29.73	d.309.1.1	119907
1j32A	388	29.80	c.67.1.1	77067
1ogaD	215	29.89	b.1.1.1,b.1.1.2	86990,86991
1hq8A	123	34.89	d.169.1.1	61127
2vjqA	428	38.85		
1hpcA	131	39.87	b.84.1.1	28221
2gysA	419	42.97	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1htp	131	44.56		
1xi9A	406	55.54	c.67.1.1	115355
1j1jA	240	65.67	a.118.16.1	90762
3imaB	91	73.00		
1grjA	158	76.96	a.2.1.1,d.26.1.2	15691,38433
2ka7A	124	81.03		
2jysA	107	82.42		
2vuwA	336	82.55		
1zy4A	303	83.19		
1mgrA	99	83.24	d.1.1.2	79106