# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3f1zA 133 1.437 1h9sA 140 1.874 b.40.6.2,b.40.6.2 60843,60844 2fhdA 153 2.071 1b9mA 265 3.485 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1gutA 68 4.306 b.40.6.1 65576 3dm3A 105 6.062 2i45A 107 6.634 1iz6A 138 6.825 b.34.5.2,b.40.4.5 76976,76977 1g291 372 6.864 2oq0A 206 7.856 b.40.16.1,b.40.16.1 148970,148971 1ybyA 215 10.06 2uubL 135 11.12 b.40.4.5 139943 2f23A 156 13.17 a.2.1.1,d.26.1.2 132797,132798 1fguA 252 13.63 b.40.4.3,b.40.4.3 25296,25297 1fr3A 67 15.39 b.40.6.1 25436 1x6oA 174 16.97 b.34.5.2,b.40.4.5 109493,109494 2vqeL 135 17.67 i.1.1.1 153436 1fjgL 135 18.71 b.40.4.5 25346 1h9mA 145 19.88 b.40.6.2,b.40.6.2 60833,60834 2cqaA 95 21.80 b.40.4.14 130716 1gcqC 70 22.28 b.34.2.1 60436 2egeA 75 22.62 1ia9A 280 23.70 d.144.1.5 62113 2ckkA 127 25.41 1e2wA 251 27.34 b.2.6.1,b.84.2.2 22466,28252 3bmbA 136 27.79 3gbmA 334 28.02 3knhL 132 28.06 3e0eA 97 28.29 3i4oA 79 28.62 2zl7A 295 28.73 2pn0A 141 29.79 3h15A 198 30.92 1bkb 136 31.16 1exmA 405 32.16 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2wxuA 370 35.64 1o7iA 119 36.44 b.40.4.3 86642 1ha0A 494 36.70 b.19.1.2,h.3.1.1 23824,45697 3eykA 323 38.49 1rv0H 328 39.16 b.19.1.2 97895 1igqA 62 41.43 b.34.1.3 66130 1gy6A 127 43.37 d.17.4.2 70736 1ykwA 435 43.49 c.1.14.1,d.58.9.1 123565,123566 1bkbA 136 44.10 b.34.5.2,b.40.4.5 24609,25341 3gbnA 331 45.12 3lygA 120 45.23 2ov0A 105 45.98 b.6.1.1 149033 2vknA 70 46.70 3ku3A 327 49.54 2hdvA 111 49.62 1ci3M 249 49.78 b.2.6.1,b.84.2.2 22480,28266 1krhA 338 49.98 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2ofsA 75 50.02 1z47A 355 51.04 3bjuA 521 51.97 3db3A 161 52.37 1jmcA 246 52.60 b.40.4.3,b.40.4.3 25300,25301 1ywpA 64 53.27 2bmwA 304 53.87 b.43.4.2,c.25.1.1 128815,128816 2glwA 92 54.87 3m6sA 331 57.79 1rvtH 328 57.91 b.19.1.2 97931 1rvxA 327 59.37 b.19.1.2 97937 2viuA 328 60.11 b.19.1.2 23797 1ruyH 328 60.38 b.19.1.2 97883 1d2eA 397 60.69 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 3d26A 301 61.06 1smxA 96 62.35 b.40.4.5 105772 3co8A 380 62.94 3lyrA 243 62.98 1jsmA 325 65.38 b.19.1.2 63264 3e6eA 371 66.10 3crkC 87 67.92 1rd8A 335 68.01 b.19.1.2 97308 2g0qA 173 68.44 2b3gA 123 68.84 b.40.4.3 127786 1p3hA 99 69.28 b.35.1.1 87734 1sfdA 105 69.34 b.6.1.1 105480 1jb7A 495 70.70 b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1fdr 248 71.36 2ed6A 170 72.42 b.170.1.1 146792 1k0hA 117 72.86 b.106.1.2 71975 3cqtA 79 75.19 2zbvA 263 77.10 1id2A 106 77.18 b.6.1.1 62288 2idqA 105 77.51 3gqhA 163 78.23 2f9hA 129 78.29 b.161.1.1 133162 1jsdA 319 79.87 b.19.1.2 63258 3fvqA 359 79.87 2q4zA 312 80.99 1vqoK 132 81.00 b.39.1.1 120372 3h6mA 143 82.63 2cxvA 219 82.74 b.47.1.4 131012 2j8bA 79 82.75 g.7.1.3 147908 2z30B 65 83.28 3jqqA 316 83.34 1ey4A 149 84.69 b.40.1.1 24815 1uebA 184 85.35 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2je6I 251 85.39 b.40.4.5,b.84.4.2,d.51.1.1 147995,147996,147997 2rcfA 91 86.00 b.40.15.1 151885 1zuuA 58 87.87 b.34.2.1 125688 1djxB 624 87.88 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1o54A 277 88.20 c.66.1.13 92482 1s0uA 408 89.01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1bxaA 105 89.91 b.6.1.1 22839