This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA A A 3 3 NATRO P A 4 4 NATAA L A 5 5 NATAA Q A 6 6 NATAA Q A 7 7 NATAA K A 8 8 NATAA Q A 9 9 NATAA V A 10 10 NATAA V A 11 11 NATAA V A 12 12 NATAA S A 13 13 NATAA N A 14 14 NATAA K A 15 15 NATAA R A 16 16 NATAA E A 17 17 NATAA K A 18 18 NATRO P A 19 19 NATAA V A 20 20 NATAA N A 21 21 NATAA D A 22 22 NATAA R A 23 23 NATAA R A 24 24 NATAA S A 25 25 NATAA R A 26 26 NATAA Q A 27 27 NATAA Q A 28 28 NATAA E A 29 29 NATAA V A 30 30 NATAA S A 31 31 NATRO P A 32 32 NATAA A A 33 33 NATAA G A 34 34 NATAA T A 35 35 NATAA S A 36 36 NATAA M A 37 37 NATAA R A 38 38 NATAA Y A 39 39 NATAA E A 40 40 NATAA A A 41 41 NATAA S A 42 42 NATAA F A 43 43 NATAA K A 44 44 NATRO P A 45 45 NATAA L A 46 46 NATAA N A 47 47 NATAA G A 48 48 NATAA G A 49 49 NATAA L A 50 50 NATAA E A 51 51 NATAA K A 52 52 NATAA T A 53 53 NATAA F A 54 54 NATAA R A 55 55 NATAA L A 56 56 NATAA Q A 57 57 NATAA A A 58 58 NATAA Q A 59 59 NATAA Q A 60 60 NATAA Y A 61 61 NATAA H A 62 62 NATAA A A 63 63 NATAA L A 64 64 NATAA T A 65 65 NATAA V A 66 66 NATAA G A 67 67 NATAA D A 68 68 NATAA Q A 69 69 NATAA G A 70 70 NATAA T A 71 71 NATAA L A 72 72 NATAA S A 73 73 NATAA Y A 74 74 NATAA K A 75 75 NATAA G A 76 76 NATAA T A 77 77 NATAA R A 78 78 NATAA F A 79 79 NATAA V A 80 80 NATAA G A 81 81 NATAA F A 82 82 NATAA V A 83 83 NATAA S A 84 84 NATAA R A 85 85 NATAA T A 86 86 NATRO P A 87 87 NATAA D A 88 88 NATAA N A 89 89 NATAA E