# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3l9jT 149 7.06e-01 2fblA 153 1.02e+00 d.63.1.2 133249 2tnfA 156 1.03e+00 2tnfA b.22.1.1 23880 4tsvA 150 1.10e+00 2tnfA b.22.1.1 23860 1ka9H 200 1.46e+00 c.23.16.1 77308 2e7aA 157 1.67e+00 2sfaA 191 2.52e+00 b.47.1.1 25815 1y6kR 214 3.03e+00 b.1.2.1,b.1.2.1 122663,122664 1sgpE 185 3.66e+00 1qq4A b.47.1.1 25816 2qa9E 185 3.68e+00 b.47.1.1 150200 3h0lB 478 4.04e+00 2ezvA 269 4.70e+00 1mbmA 198 5.03e+00 b.47.1.3 78916 1z47A 355 5.52e+00 2jysA 107 5.58e+00 1fguA 252 5.67e+00 1jmcA b.40.4.3,b.40.4.3 25296,25297 2jjuA 127 6.65e+00 3kf8A 220 7.78e+00 1aihA 170 7.83e+00 1aihA d.163.1.1 42149 3hzhB 172 7.93e+00 2glzA 153 8.83e+00 d.81.3.1 135348 1jmcA 246 9.40e+00 1jmcA b.40.4.3,b.40.4.3 25300,25301 1onqA 283 9.81e+00 b.1.1.2,d.19.1.1 93365,93366 2wgoA 98 1.09e+01 2f0xA 148 1.09e+01 d.38.1.5 132673 2c5uA 375 1.11e+01 2yz1A 120 1.12e+01 3f5oA 148 1.22e+01 3i1iA 377 1.33e+01 1ep0A 185 1.35e+01 1dzrA b.82.1.1 28080 2p2sA 336 1.36e+01 1oqeA 144 1.39e+01 b.22.1.1 87286 2bo9B 222 1.46e+01 d.17.1.5,d.17.1.5 128898,128899 1j1tA 233 1.52e+01 b.29.1.18 90771 3dgtA 280 1.59e+01 2h4uA 145 1.66e+01 d.38.1.5 136082 1y3tA 337 1.69e+01 b.82.1.5 122600 3fvqA 359 1.77e+01 1kxgA 152 1.79e+01 b.22.1.1 73145 1r17A 343 1.81e+01 b.2.3.4,b.2.3.4 96796,96797 2fyqA 194 1.85e+01 2eixA 243 1.89e+01 2pbeA 294 1.97e+01 a.160.1.5,d.218.1.13 149355,149356 1yb2A 275 2.02e+01 c.66.1.13 122868 3eo6A 106 2.05e+01 3jxsA 174 2.06e+01 1bdyA 123 2.15e+01 1bdyA b.7.1.1 23190 1cipA 353 2.31e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1ktjA 129 2.42e+01 b.1.18.7 72974 1wnhA 225 2.46e+01 2dawA 154 2.52e+01 d.20.1.3 146477 3bwlA 126 2.56e+01 1k3bA 119 2.60e+01 b.61.5.1 72016 1d7qA 143 2.63e+01 1d7qA b.40.4.5 25331 1o13A 136 2.64e+01 c.55.5.1 80762 2b0rA 202 2.65e+01 2fujA 137 2.71e+01 d.38.1.1 134175 7odcA 424 2.82e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1nb9A 147 2.94e+01 b.43.5.1 85515 2kl6A 114 2.97e+01 1ocsA 162 3.00e+01 d.189.1.1 92776 1thg 544 3.03e+01 1thg 1thgA 544 3.03e+01 c.69.1.17 34763 3f1zA 133 3.05e+01 2yweA 600 3.08e+01 2yx6A 121 3.08e+01 2h0vA 338 3.09e+01 3m6sA 331 3.23e+01 2fqpA 97 3.30e+01 3hxjA 330 3.34e+01 3kwuA 150 3.39e+01 3e53A 480 3.40e+01 1h6hA 143 3.40e+01 d.189.1.1 65681 1yrkA 126 3.42e+01 3iduA 127 3.44e+01 3gxsA 109 3.45e+01 3laxA 109 3.45e+01 1xwvA 129 3.47e+01 b.1.18.7 116134 1svsA 353 3.61e+01 c.37.1.8 106051 2gllA 171 3.68e+01 1x99A 145 3.75e+01 b.97.1.2 114978 2nwhA 317 3.76e+01 2ztgA 739 3.83e+01 3h3iA 150 3.90e+01 2djfA 119 3.95e+01 b.61.5.1 131541 2ak4D 211 3.96e+01 b.1.1.1,b.1.1.2 144808,144809 3k2mC 101 4.03e+01 2uv3A 126 4.06e+01 2ooiA 162 4.09e+01 d.190.1.2 148926 2ealA 148 4.09e+01 2zhnA 148 4.34e+01 1zc6A 305 4.42e+01 c.55.1.5,c.55.1.5 124888,124889 1czpA 98 4.49e+01 1awd d.15.4.1 37645 2cn5A 329 4.49e+01 2ywdA 191 4.51e+01 3lwgA 145 4.60e+01 2kk8A 84 4.62e+01 3lw3A 145 4.65e+01 2ibpA 409 4.67e+01 2vxeA 88 4.76e+01 1iqyA 638 4.80e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 3ejkA 174 4.84e+01 2fnjA 226 4.95e+01 b.29.1.22 133818 1kzlA 208 5.01e+01 b.43.4.3,b.43.4.3 77635,77636 1epfA 191 5.05e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1q8rA 120 5.20e+01 d.79.6.1 96225 2w2sA 202 5.31e+01 3eykA 323 5.33e+01 2ebdA 309 5.37e+01 2jjwA 127 5.40e+01 2brjA 188 5.47e+01 b.159.1.1 146213 3i35A 60 5.47e+01 2amuA 143 5.51e+01 2zl8A 638 5.53e+01 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 1o7iA 119 5.53e+01 b.40.4.3 86642 1bkb 136 5.55e+01 1bkb 1bkbA 136 5.55e+01 b.34.5.2,b.40.4.5 24609,25341 1yvcA 70 5.60e+01 b.40.4.12 124094 1z8kA 193 5.61e+01 b.159.1.1 124703 1azsC 388 5.93e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 3hfiA 170 5.97e+01 1khdA 345 6.14e+01 a.46.2.1,c.27.1.1 77400,77401 1ruzH 328 6.21e+01 b.19.1.2 97889 1rjoA 646 6.22e+01 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1q1cA 280 6.24e+01 d.26.1.1,d.26.1.1 104474,104475 2jk8A 302 6.26e+01 3fz3A 531 6.31e+01 2ckkA 127 6.33e+01 2fsrA 195 6.34e+01 d.108.1.1 134036 3e18A 359 6.35e+01 2v7bA 529 6.36e+01 1w6gA 646 6.50e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2yvlA 248 6.55e+01 1k9vF 201 6.64e+01 c.23.16.1 68365 2ov7A 137 6.65e+01 2zklA 369 6.66e+01 1f3uB 171 6.68e+01 1f3uB b.65.1.1 27525 2bycA 137 6.87e+01 d.58.10.2 129476 2h8eA 120 7.12e+01 1iqaA 160 7.15e+01 b.22.1.1 71274 2d1wA 638 7.16e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2c8eE 211 7.16e+01 1jvnA 555 7.22e+01 c.1.2.1,c.23.16.1 67355,67356 1wkyA 464 7.26e+01 b.18.1.31,c.1.8.3 120992,120993 3gqhA 163 7.28e+01 2q03A 138 7.32e+01 b.159.2.1 149979 3h15A 198 7.36e+01 1sqlA 146 7.38e+01 d.96.1.3 105925 1lylA 504 7.39e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 3g0mA 141 7.41e+01 1fo0A 116 7.42e+01 1tvdA b.1.1.1 20610 3mhsA 476 7.48e+01 2a9kB 223 7.54e+01 d.166.1.1 126443 3biyA 380 7.57e+01 1ui7A 638 7.58e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 2j05A 65 7.63e+01 1ox6A 555 7.63e+01 c.1.2.1,c.23.16.1 87505,87506 2ywjA 186 7.74e+01