# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	0.1044	c.37.1.6	122256
1uj2A	252	2.082	c.37.1.6	99452
2c12A	439	3.757	a.29.3.1,e.6.1.1	129616,129617
1p3wA	404	10.77	c.67.1.3	87752
2cxnA	557	10.97		
1wymA	155	12.02		
3ljkA	543	12.95		
1j6rA	214	14.87	d.173.1.2	71598
2oa4A	101	15.79	a.4.12.3	148690
3hjbA	574	17.64		
1okcA	297	18.61	f.42.1.1	93248
3dffA	273	21.07		
1h0cA	392	30.17	c.67.1.3	83424
1elqA	390	30.79	c.67.1.3	34436
1kmkA	406	33.34	c.67.1.3	68696
2avwA	311	33.95		
2zc0A	407	35.92		
1iatA	557	37.46	c.80.1.2	62123
2od4A	101	38.79	d.58.4.20	148734
3m5rA	133	42.50		
1qhlA	227	43.39	c.37.1.12	32382
1c7nA	399	44.59	c.67.1.3	34413
1eluA	390	46.14	c.67.1.3	34434
1d2fA	390	51.08	c.67.1.3	34411
1nc5A	373	56.25	a.102.1.6	85548
2hoxA	427	56.56	c.67.1.1	136644
3cihA	739	58.61		
3fc7A	125	59.92		
3md7A	293	61.36		
1a05A	358	63.38	c.77.1.1	35059
3gf4A	390	66.32		
1suwA	249	67.92	e.52.1.1	106027
1cm7A	363	69.04	c.77.1.1	35063
2ejwA	332	69.14		
1cnzA	363	70.70	c.77.1.1	35061
1vblA	416	73.72		
2gfiA	458	75.55		
2z8zA	617	75.90		
3d19A	283	77.38	a.29.13.1,a.29.13.1	157176,157177
1bg6	359	79.23		
3i1aA	339	79.64		
3czbA	351	79.81		
3euvB	427	80.34		
1eg5A	384	81.54	c.67.1.3	34429
1qhfA	240	83.14	c.60.1.1	33960
1jh6A	189	83.84	d.61.1.1	66707
3lvmA	423	84.41		
2vv6A	119	84.62		
3dzzA	391	86.55		
3kgwA	393	87.35