# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xrjA	261	0.05531	c.37.1.6	122256
1uj2A	252	1.307	c.37.1.6	99452
2c12A	439	1.410	a.29.3.1,e.6.1.1	129616,129617
1p3wA	404	10.20	c.67.1.3	87752
2cxnA	557	11.03		
3hjbA	574	11.50		
1okcA	297	12.95	f.42.1.1	93248
1wymA	155	13.98		
3ljkA	543	14.52		
1elqA	390	19.81	c.67.1.3	34436
2hoxA	427	20.06	c.67.1.1	136644
3dffA	273	22.76		
2gufA	594	23.26	f.4.3.3	135736
2avwA	311	23.46		
2oa4A	101	31.19	a.4.12.3	148690
1qhlA	227	31.58	c.37.1.12	32382
3d19A	283	33.08	a.29.13.1,a.29.13.1	157176,157177
1iatA	557	33.57	c.80.1.2	62123
1eluA	390	34.23	c.67.1.3	34434
2p24B	259	34.58		
1kmkA	406	34.62	c.67.1.3	68696
1cm7A	363	38.20	c.77.1.1	35063
3fc7A	125	39.72		
1i88A	389	42.56	c.95.1.2,c.95.1.2	66070,66071
1a05A	358	46.12	c.77.1.1	35059
3czbA	351	47.60		
1suwA	249	49.01	e.52.1.1	106027
3i1aA	339	54.01		
2ejwA	332	55.16		
1cnzA	363	56.22	c.77.1.1	35061
1u0tA	307	57.85	e.52.1.1	107567
1gweA	503	59.67	e.5.1.1	70667
1eg5A	384	61.44	c.67.1.3	34429
3m5rA	133	63.94		
1vd5A	377	65.54	a.102.1.7	108518
2zc0A	407	68.26		
2z8zA	617	69.79		
3besR	250	70.88		
3gf4A	390	71.15		
3lvmA	423	72.30		
2gfiA	458	73.17		
1yj7A	171	73.25		
2vv6A	119	76.11		
3ez8A	537	78.24		
1u0fA	564	80.35	c.80.1.2	112912
3cihA	739	80.77		
1d2fA	390	84.40	c.67.1.3	34411
1wxcA	281	84.50		
1j6rA	214	84.85	d.173.1.2	71598
1c7nA	399	87.81	c.67.1.3	34413
3d6mB	89	88.12